Three pillars for achieving quantum mechanical molecular dynamics simulations of huge systems: Divide-and-conquer, density-functional tight-binding, and massively parallel computation

Hiroaki Nishizawa, Yoshifumi Nishimura, Masato Kobayashi, Stephan Irle, Hiromi Nakai

Research output: Contribution to journalArticlepeer-review

82 Scopus citations

Abstract

The linear-scaling divide-and-conquer (DC) quantum chemical methodology is applied to the density-functional tight-binding (DFTB) theory to develop a massively parallel program that achieves on-the-fly molecular reaction dynamics simulations of huge systems from scratch. The functions to perform large scale geometry optimization and molecular dynamics with DC-DFTB potential energy surface are implemented to the program called DC-DFTB-K. A novel interpolation-based algorithm is developed for parallelizing the determination of the Fermi level in the DC method. The performance of the DC-DFTB-K program is assessed using a laboratory computer and the K computer. Numerical tests show the high efficiency of the DC-DFTB-K program, a single-point energy gradient calculation of a one-million-atom system is completed within 60 s using 7290 nodes of the K computer.

Original languageEnglish
Pages (from-to)1983-1992
Number of pages10
JournalJournal of Computational Chemistry
DOIs
StatePublished - Aug 5 2016
Externally publishedYes

Funding

FundersFunder number
Japan Society for the Promotion of Science26248009, 15K13629, 16J05827

    Keywords

    • density-functional tight-binding method
    • linear-scaling divide-and-conquer method
    • massively parallel computation
    • quantum mechanical molecular dynamics

    Fingerprint

    Dive into the research topics of 'Three pillars for achieving quantum mechanical molecular dynamics simulations of huge systems: Divide-and-conquer, density-functional tight-binding, and massively parallel computation'. Together they form a unique fingerprint.

    Cite this