The role of active mRNA–ribosome dynamics and closing constriction in daughter chromosome separation in Escherichia coli

  • Chathuddasie I. Amarasinghe
  • , Mu Hung Chang
  • , Jaana Männik
  • , Scott T. Retterer
  • , Maxim O. Lavrentovich
  • , Jaan Männik

Research output: Contribution to journalArticlepeer-review

Abstract

The mechanisms by which two sister chromosomes separate and partition into daughter cells in bacteria remain poorly understood. A recent theoretical model has proposed that out-of-equilibrium central dogma reactions involving mRNA and ribosomes play a significant role in this process. Here, we test this idea in the Escherichia coli model system using high-throughput fluorescence microscopy in microfluidic devices. We compare our experimental observations with predictions from a reaction–diffusion model that includes central dogma-related reactions and excluded volume interactions between ribosomal subunits, polysomes, and chromosomal DNA. Our results show that the nonequilibrium reactions of ribosomes cause them to aggregate at the midcell, and this process facilitates the separation of the two daughter chromosomes. However, the observed effects are weaker in live cells than our one-dimensional reaction–diffusion model predicts. Rather than relying solely on active mRNA–ribosome dynamics, our data suggest that the closing division septum via steric interactions and potentially entropic forces between two DNA strands coupled to cell elongation act as additional mechanisms to ensure faithful partitioning of the nucleoids to two daughter cells.

Original languageEnglish
Article numbere2508100122
JournalProceedings of the National Academy of Sciences of the United States of America
Volume122
Issue number45
DOIs
StatePublished - Nov 11 2025

Funding

We thank Rachel McCord and Steve Abel for their valuable comments and Sriram Tiruvadi-Krishnan for help in strain construction. A part of this research was conducted at the Center for Nanophase Materials Sciences, which is a US Department of Energy Office of Science User Facility at Oak Ridge National Laboratory. This work was supported by the NIH award GM127413 (Jaan Männik) and NSF MCB2313719 (Jaan Männik).

Keywords

  • DNA partitioning
  • central dogma processes
  • nucleoid
  • reaction–diffusion system
  • sub-cellular organization

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