Simplified parallel domain traversal

Wesley Kendall, Jingyuan Wang, Melissa Allen, Tom Peterka, Jian Huang, David Erickson

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

34 Scopus citations

Abstract

Many data-intensive scientific analysis techniques require global domain traversal, which over the years has been a bottleneck for efficient parallelization across distributed-memory architectures. Inspired by MapReduce and other simplified parallel programming approaches, we have designed DStep, a flexible system that greatly simplifies efficient parallelization of domain traversal techniques at scale. In order to deliver both simplicity to users as well as scalability on HPC platforms, we introduce a novel two-tiered communication architecture for managing and exploiting asynchronous communication loads. We also integrate our design with advanced parallel I/O techniques that operate directly on native simulation output. We demonstrate DStep by performing teleconnection analysis across ensemble runs of terascale atmospheric CO2 and climate data, and we show scalability results on up to 65,536 IBM BlueGene/P cores.

Original languageEnglish
Title of host publicationProceedings of 2011 SC - International Conference for High Performance Computing, Networking, Storage and Analysis
DOIs
StatePublished - 2011
Event2011 International Conference for High Performance Computing, Networking, Storage and Analysis, SC11 - Seattle, WA, United States
Duration: Nov 12 2011Nov 18 2011

Publication series

NameProceedings of 2011 SC - International Conference for High Performance Computing, Networking, Storage and Analysis

Conference

Conference2011 International Conference for High Performance Computing, Networking, Storage and Analysis, SC11
Country/TerritoryUnited States
CitySeattle, WA
Period11/12/1111/18/11

Keywords

  • Atmospheric ensemble analysis
  • Data-intensive analysis
  • Parallel particle tracing
  • Parallel processing

Fingerprint

Dive into the research topics of 'Simplified parallel domain traversal'. Together they form a unique fingerprint.

Cite this