Rules of Physical Mathematics Govern Intrinsically Disordered Proteins

Kingshuk Ghosh, Jonathan Huihui, Michael Phillips, Austin Haider

Research output: Contribution to journalReview articlepeer-review

27 Scopus citations

Abstract

In stark contrast to foldable proteins with a unique folded state, intrinsically disordered proteins and regions (IDPs) persist in perpetually disordered ensembles. Yet an IDP ensemble has conformational features-even when averaged-that are specific to its sequence. In fact, subtle changes in an IDP sequence can modulate its conformational features and its function. Recent advances in theoretical physics reveal a set of elegant mathematical expressions that describe the intricate relationships among IDP sequences, their ensemble conformations, and the regulation of their biological functions. These equations also describe the molecular properties of IDP sequences that predict similarities and dissimilarities in their functions and facilitate classification of sequences by function, an unmet challenge to traditional bioinformatics. These physical sequence-patterning metrics offer a promising new avenue for advancing synthetic biology at a time when multiple novel functional modes mediated by IDPs are emerging.

Original languageEnglish
Pages (from-to)355-376
Number of pages22
JournalAnnual Review of Biophysics
Volume51
DOIs
StatePublished - 2022
Externally publishedYes

Funding

We acknowledge support from National Institutes of Health grant R01GM138901. We are indebted to H.S. Chan,M.Gruebele, J.D. Forman-Kay,B. Schuler,D. Thirumalai, andW. Zheng for critical reading of the manuscript. We thank T. Firman,W. Kimbro, Y.H. Lin, M. Muthukumar, R.V. Pappu, S. Pathak, V. Prabhu, A. Sorano, L. Sawle, S. Vaiana, T. Sosnick, and members of the Protein Folding Consortium (Research Coordination Network supported by National Science Foundation award number 1516959) for many insightful discussions and/or collaboration over many years. We also acknowledge Sarina Bromberg for help with figures and manuscript edits.

FundersFunder number
National Science Foundation1516959
National Institutes of Health
National Institute of General Medical SciencesR01GM138901

    Keywords

    • disorder
    • function
    • heteropolymer
    • liquid-liquid phase separation
    • polyampholyte
    • proteome

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