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Role of Polymer–Protein Interactions in the Dynamics of Polymer-Integrated Protein Crystals

  • Youjeong Na
  • , Dong Le
  • , Po An Lin
  • , Zhiyin Zhang
  • , Juanita Pombo
  • , Felipe Jiménez-Ángeles
  • , Kenneth Han
  • , Ling Zhang
  • , Changwoo Do
  • , Huat Thart Chiang
  • , Monica Olvera de la Cruz
  • , Alex Frañó
  • , Gaurav Arya
  • , F. Akif Tezcan

Research output: Contribution to journalArticlepeer-review

Abstract

The incorporation of synthetic polymers into biomolecular materials provides a powerful strategy to enhance their properties. We recently showed that the interstitial spaces of highly solvated mesoporous ferritin crystals could be infiltrated with acrylate (Ac) and acrylamide (Am) monomers, which are subsequently polymerized in crystallo to yield a new class of hybrid materials termed Polymer-Integrated Protein Crystals (PIX). Our earlier studies had shown that ferritin-PIX displayed remarkable properties such as reversible expansion and contraction without losing crystalline order, efficient self-healing, and the ability to encapsulate and release large biomolecular cargo. However, the structure of the polyacrylate-co-acrylamide (p(Ac–Am)) polymer matrix, its distribution within the protein lattice, and the molecular nature of the protein–polymer interactions that ultimately engender the emergent properties of ferritin-PIX have remained unknown. Here, we combine small-angle neutron and X-ray scattering and analytical measurements with extensive all-atom and coarse-grained molecular dynamics simulations to examine the structure and dynamics of the polymer network within the crystalline framework of ferritin-PIX. Our results reveal an extensive and multivariate set of noncovalent interactions between the ferritin surfaces and p(Ac–Am) chains that sustain the structural coherence of the crystalline lattice while accommodating large-scale motions. Guided by these insights, we have demonstrated that changes in the chemical compositions of ferritin and the polymer matrix can be used to predictably control the structural dynamics of ferritin-PIX. Our increased molecular-level understanding and engineering of the polymer–protein interface in ferritin-PIX provide an important step toward the generalization of the PIX concept to other protein crystals and polymer compositions.

Original languageEnglish
Pages (from-to)18080-18094
Number of pages15
JournalJournal of the American Chemical Society
Volume148
Issue number17
DOIs
StatePublished - May 6 2026

Funding

We thank the members of the Tezcan group for helpful discussions, Dr. Thomas Weiss and Dr. Tsutomu Matsui for help with the SAXS measurements, and Dr. Lauren Matthews for help with SANS measurements. This work was supported by the UC San Diego Materials Research Science and Engineering Center (UCSD MRSEC, supported by the National Science Foundation, Grant DMR-2011924) (SAXS, SANS, and CG-MD analyses). FJA and MOdlC were supported by the NSF Center for the Chemistry of Molecularly Optimized Networks (MONET) (CHE-2116298). Additional support was provided by the US Department of Energy (BES, Division of Materials Sciences, Biomolecular Materials Program, DE-SC0003844) (the development of the PIX concept, AA-MD analyses, and PIX characterization). SAXS data were collected at SSRL, which is supported by the DOE Office of Science, Office of Basic Energy Sciences under contract no. DE-AC02-76SF00515. A portion of this research (SANS) used resources at the Spallation Neutron Source, a DOE Office of Science User Facility operated by Oak Ridge National Laboratory. The beam time was allocated to EQ-SANS BL-6 under proposal number CNMS2022-A-01129 (IPTS-31106). Computational resources for CG-MD simulations were provided by the Duke Compute Cluster and the ACCESS program supported by NSF (grants no’s. ACI-2138259, 2138286, 2138307, 2137603, and 2138296).

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