Regional differences in the structure of juglans nigra phytobiome reflect geographical differences in thousand cankers disease severity

Aaron J. Onufrak, Geoffrey M. Williams, William E. Klingeman, Melissa A. Cregger, Dawn M. Klingeman, Jennifer M. DeBruyn, Matthew D. Ginzel, Denita Hadziabdic

Research output: Contribution to journalArticlepeer-review

10 Scopus citations

Abstract

Thousand cankers disease threatens Juglans nigra (Eastern Black Walnut) in urban and natural landscapes. Incidence and severity of thousand cankers disease is higher in the host's introduced range in the western United States. We hypothesized that these differences are driven partly by geographical variation in the host phytobiome due to its roles in host stress tolerance, nutrient acquisition, and defense. To evaluate the role of the phytobiome in mediating thousand cankers disease, we characterized the J. nigra phytobiome of diseased and healthy trees in portions of its native (Indiana and Tennessee) and introduced (Washington) ranges. Grafted clones present in each state and open-pollinated populations were sampled. DNA was extracted from soil and branch (caulosphere) tissues and internal transcribed spacer and 16s regions were sequenced for characterization of fungal and bacterial communities.We found that microbial communities in the caulosphere and soil differ between native and introduced ranges of J. nigra and harbor different mutualistic and pathogenic microorganisms. Additionally, caulospheremicrobial communities were more species rich and diverse in the native range of J. nigra, suggesting greater levels of functional redundancy and multifunctionality in the native-range phytobiome compared with the introduced range. We also found higher network complexity in the caulosphere of trees in the introduced range and evidence for two alternative stable community states associated with diseased and healthy trees. Our results provide support for the hypothesis that geographical variation in thousand cankers disease incidence and severity is partially driven by differences in the phytobiome of J. nigra in its introduced and native ranges.

Original languageEnglish
Pages (from-to)388-404
Number of pages17
JournalPhytobiomes Journal
Volume4
Issue number4
DOIs
StatePublished - Sep 21 2020

Funding

Funding: This work was supported, in part, by the Fred M. Van Eck Forestry Foundation, The University of Tennessee AgResearch Funding, University of Tennessee’s Open Publishing Support Fund, the University of Tennessee AgResearch Doctoral Scholarship Program, the Department of Entomology and Plant Pathology, and the United States Department of Agriculture National Institute of Food and Agriculture (NIFA) (Hatch project 1009630: TEN00495). Additional funding support for co-authors M. Cregger and D. Klingeman was provided by the U.S. Department of Energy Genomic Science Program, Office of Science, Biological and Environmental Research, as part of the Plant Microbe Interfaces Scientific Focus Area at ORNL (https://pmi.ornl.gov).

FundersFunder number
Department of Entomology and Plant Pathology
United States Department of Agriculture National Institute of Food and Agriculture
U.S. Department of Energy
National Institute of Food and Agriculture1009630, TEN00495
Biological and Environmental Research
Oak Ridge National Laboratory
University of Tennessee

    Keywords

    • Biotic resistance hypothesis
    • Ecology
    • Endophytes
    • Fungal and bacterial communities
    • Metagenomics
    • Microbiome
    • Mutualism
    • Network complexity
    • Soil ecology
    • Thousand cankers disease

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