RB-TnSeq barcode abundance data sets for Novosphingobium aromaticivorans grown on the β-5-linked aromatic dimer dehydrodiconiferyl alcohol

Fletcher Metz; Marco N. Allemann; Joshua K. Michener; Kevin S. Myers; Fachuang Lu; Daniel R. Noguera; Timothy J. Donohue

doi:10.1128/mra.00844-24

RB-TnSeq barcode abundance data sets for Novosphingobium aromaticivorans grown on the β-5-linked aromatic dimer dehydrodiconiferyl alcohol

Fletcher Metz
, Marco N. Allemann
, Joshua K. Michener
, Kevin S. Myers
, Fachuang Lu
, Daniel R. Noguera
, Timothy J. Donohue

Biological Systems Design Group

Research output: Contribution to journal › Article › peer-review

Abstract

A randomly barcoded transposon insertion sequencing (RB-TnSeq) library of Novosphingobium aromaticivorans DSM12444 was grown in media containing either glucose or the β-5-linked aromatic dimer dehydrodiconiferyl alcohol (DC-A) as the sole carbon source. The cultures were grown to saturation and then sequenced, yielding the barcode abundance data sets presented here.

Original language	English
Journal	Microbiology Resource Announcements
Volume	14
Issue number	1
DOIs	https://doi.org/10.1128/mra.00844-24
State	Published - Jan 2025

Funding

This material is based upon work supported by the Great Lakes Bioenergy Research Center, U.S. Department of Energy, Office of Science, Biological and Environmental Research Program under Award Number DE-SC0018409. F.M. was partially supported by NIH Training Grant #5T32GM007133. M.N.A. and J.K.M. were supported by the U.S. DOE, Office of Science, Office of Biological and Environmental Research, through an Early Career Award to J.K.M. This material is based upon work supported by the Great Lakes Bioenergy Research Center, U.S. Department of Energy, Office of Science, Biological and Environmental Research Program under Award Number DE-SC0018409. F.M. was partially supported by NIH Training Grant #5T32GM007133. M.N.A. and J.K.M. were supported by the U.S. DOE, Office of Science, Office of Biological and Environmental Research, through an Early Career Award to J.K.M. Funder Grant(s) Author(s) U.S. Department of Energy (DOE) DE-SC0018409 Fletcher Metz Kevin S. Myers Fachuang Lu Daniel R. Noguera Timothy J. Donohue U.S. Department of Energy (DOE) DE-AC05-00OR22725 Marco N. Allemann Joshua K. Michener U.S. Department of Energy (DOE) ERKP971 Marco N. Allemann Joshua K. Michener HHS | National Institutes of Health (NIH) 5T32GM007133 Fletcher Metz

Keywords

aromatic compounds
genetics
genomics
ligninolysis

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10.1128/mra.00844-24

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title = "RB-TnSeq barcode abundance data sets for Novosphingobium aromaticivorans grown on the β-5-linked aromatic dimer dehydrodiconiferyl alcohol",

abstract = "A randomly barcoded transposon insertion sequencing (RB-TnSeq) library of Novosphingobium aromaticivorans DSM12444 was grown in media containing either glucose or the β-5-linked aromatic dimer dehydrodiconiferyl alcohol (DC-A) as the sole carbon source. The cultures were grown to saturation and then sequenced, yielding the barcode abundance data sets presented here.",

keywords = "aromatic compounds, genetics, genomics, ligninolysis",

author = "Fletcher Metz and Allemann, \{Marco N.\} and Michener, \{Joshua K.\} and Myers, \{Kevin S.\} and Fachuang Lu and Noguera, \{Daniel R.\} and Donohue, \{Timothy J.\}",

note = "Publisher Copyright: Copyright {\textcopyright} 2024 Metz et al.",

year = "2025",

month = jan,

doi = "10.1128/mra.00844-24",

language = "English",

volume = "14",

journal = "Microbiology Resource Announcements",

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AU - Metz, Fletcher

AU - Allemann, Marco N.

AU - Michener, Joshua K.

AU - Myers, Kevin S.

AU - Lu, Fachuang

AU - Noguera, Daniel R.

AU - Donohue, Timothy J.

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N2 - A randomly barcoded transposon insertion sequencing (RB-TnSeq) library of Novosphingobium aromaticivorans DSM12444 was grown in media containing either glucose or the β-5-linked aromatic dimer dehydrodiconiferyl alcohol (DC-A) as the sole carbon source. The cultures were grown to saturation and then sequenced, yielding the barcode abundance data sets presented here.

AB - A randomly barcoded transposon insertion sequencing (RB-TnSeq) library of Novosphingobium aromaticivorans DSM12444 was grown in media containing either glucose or the β-5-linked aromatic dimer dehydrodiconiferyl alcohol (DC-A) as the sole carbon source. The cultures were grown to saturation and then sequenced, yielding the barcode abundance data sets presented here.

KW - aromatic compounds

KW - genetics

KW - genomics

KW - ligninolysis

UR - https://www.scopus.com/pages/publications/85216245951

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DO - 10.1128/mra.00844-24

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JF - Microbiology Resource Announcements

IS - 1

ER -

RB-TnSeq barcode abundance data sets for Novosphingobium aromaticivorans grown on the β-5-linked aromatic dimer dehydrodiconiferyl alcohol

Abstract

Funding

Keywords

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