Provenance storage, querying, and visualization in PBase

Víctor Cuevas-Vicenttín; Parisa Kianmajd; Bertram Ludäscher; Paolo Missier; Fernando Chirigati; Yaxing Wei; David Koop; Saumen Dey

doi:10.1007/978-3-319-16462-5_24

Provenance storage, querying, and visualization in PBase

Víctor Cuevas-Vicenttín, Parisa Kianmajd, Bertram Ludäscher, Paolo Missier, Fernando Chirigati, Yaxing Wei, David Koop, Saumen Dey

Remote Sensing & Environmental Informati

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

1 Scopus citations

Abstract

We present PBase, a repository for scientific workflows and their corresponding provenance information that facilitates the sharing of experiments among the scientific community. PBase is interoperable since it uses ProvONE, a standard provenance model for scientific workflows. Workflows and traces are stored in RDF, and with the support of SPARQL and the tree cover encoding, the repository provides a scalable infrastructure for querying the provenance data. Furthermore, through its user interface, it is possible to: visualize workflows and execution traces; visualize reachability relations within these traces; issue SPARQL queries; and visualize query results.

Original language	English
Title of host publication	Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers
Editors	Beth Plale, Bertram Ludäscher, Bertram Ludäscher
Publisher	Springer Verlag
Pages	239-241
Number of pages	3
ISBN (Electronic)	9783319164618
DOIs	https://doi.org/10.1007/978-3-319-16462-5_24
State	Published - 2015
Event	5th International Provenance and Annotation Workshop, IPAW 2014 - Cologne, Germany Duration: Jun 10 2014 → Jun 11 2014

Publication series

Name	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
Volume	8628
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	5th International Provenance and Annotation Workshop, IPAW 2014
Country/Territory	Germany
City	Cologne
Period	06/10/14 → 06/11/14

Funding

The authors thank: members of the DataONE Provenance Working Group, for helping in the specification of PBase; and members of the DataONE EVA Working Group, for their collaboration. This work was supported by NSF Award OCI-0830944 (DataONE).

Keywords

PBase
ProvONE
Provenance repository
Scientific workflows

Access to Document

10.1007/978-3-319-16462-5_24

Cite this

Cuevas-Vicenttín, V., Kianmajd, P., Ludäscher, B., Missier, P., Chirigati, F., Wei, Y., Koop, D., & Dey, S. (2015). Provenance storage, querying, and visualization in PBase. In B. Plale, B. Ludäscher, & B. Ludäscher (Eds.), Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers (pp. 239-241). (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 8628). Springer Verlag. https://doi.org/10.1007/978-3-319-16462-5_24

Cuevas-Vicenttín, Víctor ; Kianmajd, Parisa ; Ludäscher, Bertram et al. / Provenance storage, querying, and visualization in PBase. Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers. editor / Beth Plale ; Bertram Ludäscher ; Bertram Ludäscher. Springer Verlag, 2015. pp. 239-241 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

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title = "Provenance storage, querying, and visualization in PBase",

abstract = "We present PBase, a repository for scientific workflows and their corresponding provenance information that facilitates the sharing of experiments among the scientific community. PBase is interoperable since it uses ProvONE, a standard provenance model for scientific workflows. Workflows and traces are stored in RDF, and with the support of SPARQL and the tree cover encoding, the repository provides a scalable infrastructure for querying the provenance data. Furthermore, through its user interface, it is possible to: visualize workflows and execution traces; visualize reachability relations within these traces; issue SPARQL queries; and visualize query results.",

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author = "V{\'i}ctor Cuevas-Vicentt{\'i}n and Parisa Kianmajd and Bertram Lud{\"a}scher and Paolo Missier and Fernando Chirigati and Yaxing Wei and David Koop and Saumen Dey",

note = "Publisher Copyright: {\textcopyright} Springer International Publishing Switzerland 2015.; 5th International Provenance and Annotation Workshop, IPAW 2014 ; Conference date: 10-06-2014 Through 11-06-2014",

year = "2015",

doi = "10.1007/978-3-319-16462-5_24",

language = "English",

series = "Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)",

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editor = "Beth Plale and Bertram Lud{\"a}scher and Bertram Lud{\"a}scher",

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Cuevas-Vicenttín, V, Kianmajd, P, Ludäscher, B, Missier, P, Chirigati, F, Wei, Y, Koop, D & Dey, S 2015, Provenance storage, querying, and visualization in PBase. in B Plale, B Ludäscher & B Ludäscher (eds), Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), vol. 8628, Springer Verlag, pp. 239-241, 5th International Provenance and Annotation Workshop, IPAW 2014, Cologne, Germany, 06/10/14. https://doi.org/10.1007/978-3-319-16462-5_24

Provenance storage, querying, and visualization in PBase. / Cuevas-Vicenttín, Víctor; Kianmajd, Parisa; Ludäscher, Bertram et al.
Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers. ed. / Beth Plale; Bertram Ludäscher; Bertram Ludäscher. Springer Verlag, 2015. p. 239-241 (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); Vol. 8628).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

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AU - Kianmajd, Parisa

AU - Ludäscher, Bertram

AU - Missier, Paolo

AU - Chirigati, Fernando

AU - Wei, Yaxing

AU - Koop, David

AU - Dey, Saumen

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AB - We present PBase, a repository for scientific workflows and their corresponding provenance information that facilitates the sharing of experiments among the scientific community. PBase is interoperable since it uses ProvONE, a standard provenance model for scientific workflows. Workflows and traces are stored in RDF, and with the support of SPARQL and the tree cover encoding, the repository provides a scalable infrastructure for querying the provenance data. Furthermore, through its user interface, it is possible to: visualize workflows and execution traces; visualize reachability relations within these traces; issue SPARQL queries; and visualize query results.

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Cuevas-Vicenttín V, Kianmajd P, Ludäscher B, Missier P, Chirigati F, Wei Y et al. Provenance storage, querying, and visualization in PBase. In Plale B, Ludäscher B, Ludäscher B, editors, Provenance and Annotation of Data and Processes - 5th International Provenance and Annotation Workshop, IPAW 2014, Revised Selected Papers. Springer Verlag. 2015. p. 239-241. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)). doi: 10.1007/978-3-319-16462-5_24

Provenance storage, querying, and visualization in PBase

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