Abstract
The structures of aminoacrylate intermediates of wild-type, F448A mutant, and perdeuterated tyrosine phenol-lyase (TPL) formed from l-tyrosine, 3-F-l-tyrosine, S-ethyl-l-cysteine, and l-serine, with bound 4-hydroxypyridine, were determined by X-ray crystallography. All the aminoacrylate Schiff's base structures in chain A are identical regardless of the substrate used to form them. 4-Hydroxypyridine is also in an identical location, except for F448A TPL, where it is displaced about 1 Å due to the increased size of the active site. In chain B, we have found different complexes depending on the substrate. With wild-type TPL, l-tyrosine gave no density, 3-F-l-tyrosine gave a gem-diamine, and l-serine gave a gem-diamine in chain B. S-Ethyl-l-cysteine formed an aminoacrylate in chain B with both wild-type and F448A TPL, but perdeuterated TPL with S-ethyl-l-cysteine formed a gem-diamine of aminoacrylate. The kinetics of aminoacrylate intermediate formation from l-tyrosine and S-ethyl-l-cysteine were followed by stopped-flow spectrophotometry at temperatures from 281 to 320 K and hydrostatic pressures ranging from 1 bar to 1.5 kbar at 293 K. There are large negative values of ΔS‡, ΔCp ‡, ΔV‡, and Δβ‡ for aminoacrylate intermediate formation for l-tyrosine but not for S-ethyl-l-cysteine. Formation of the aminoacrylate intermediates from l-tyrosine and S-ethyl-l-cysteine shows heavy enzyme deuterium kinetic isotope effects with perdeuterated TPL that are strongly temperature- and pressure-dependent and may be normal or inverse depending on conditions. These results suggest that conformational dynamics as well as vibrational coupling play a key role in the mechanism of the elimination reaction of l-tyrosine catalyzed by TPL.
Original language | English |
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Pages (from-to) | 1692-1703 |
Number of pages | 12 |
Journal | ACS Catalysis |
Volume | 10 |
Issue number | 3 |
DOIs | |
State | Published - Feb 7 2020 |
Funding
Data were collected at Southeast Regional Collaborative Access Team (SER-CAT) 22-ID and 22-BM beamlines at the Advanced Photon Source, Argonne National Laboratory, and the University of Georgia X-ray diffraction Core Facility (XRDC). SER-CAT is supported by its member institutions (see https://www.ser.aps.anl.gov/www.ser-cat.org/members.html ) and equipment grants (S10 RR25528 and S10 RR028976) from the National Institutes of Health. Use of the Advanced Photon Source was supported by the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences, under contract no. W-31-109-Eng-3. The XRDC is supported by its UGA member groups ( http://x-ray.uga.edu/ ) and an equipment grant (S10 OD021762) from the National Institutes of Health.
Keywords
- compressibility
- enzyme mechanism
- heat capacity
- pressure dependence
- pyridoxal-5′-phosphate
- stopped-flow kinetics
- temperature dependence