PaRSEC in practice: Optimizing a legacy chemistry application through distributed task-based execution

Anthony Danalis, Heike Jagode, George Bosilca, Jack Dongarra

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

17 Scopus citations

Abstract

Task-based execution has been growing in popularity as a means to deliver a good balance between performance and portability in the post-petascale era. The Parallel Runtime Scheduling and Execution Control (PARSEC) framework is a task-based runtime system that we designed to achieve high performance computing at scale. PARSEC offers a programming paradigm that is different than what has been traditionally used to develop large scale parallel scientific applications. In this paper, we discuss the use of PARSEC to convert a part of the Coupled Cluster (CC) component of the Quantum Chemistry package NWCHEM into a task-based form. We explain how we organized the computation of the CC methods in individual tasks with explicitly defined data dependencies between them and re-integrated the modified code into NWCHEM. We present a thorough performance evaluation and demonstrate that the modified code outperforms the original by more than a factor of two. We also compare the performance of different variants of the modified code and explain the different behaviors that lead to the differences in performance.

Original languageEnglish
Title of host publicationProceedings - 2015 IEEE International Conference on Cluster Computing, CLUSTER 2015
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages304-313
Number of pages10
ISBN (Electronic)9781467365987
DOIs
StatePublished - Oct 26 2015
EventIEEE International Conference on Cluster Computing, CLUSTER 2015 - Chicago, United States
Duration: Sep 8 2015Sep 11 2015

Publication series

NameProceedings - IEEE International Conference on Cluster Computing, ICCC
Volume2015-October
ISSN (Print)1552-5244

Conference

ConferenceIEEE International Conference on Cluster Computing, CLUSTER 2015
Country/TerritoryUnited States
CityChicago
Period09/8/1509/11/15

Keywords

  • DAG
  • PTG
  • PaRSEC
  • Tasks

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