Abstract
Spatial resolution plays a crucial role in quantitative assessment of various structures in brain MRI. Super resolution (SR) as a post-processing tool holds promise for restoring the high frequency details lost in a low resolution (LR) acquisition with no additional scan time. Prior multicontrast deep learning SR approaches are mostly in 2D and operate in a pre-upsampling or progressive setting. Here we propose an efficient shallow 3D projection based post-upsampling network for anisotropic SR of brain MRI. The network is optimized using losses in the spatial and frequency domains and a complementary high resolution (HR) input to inform SR of the low resolution (LR) input with tighter integration of features. We investigated the benefit of different feature aggregation strategies such as concatenation and multiplicative attention and gradient guidance from the HR target or the additional HR input. The models were trained and evaluated on diverse datasets and performed comparably with MINet, another recently developed multimodal SR model, with approximately half the number of model parameters. The model generalized well to an external test set; performed satisfactorily on acquired LR MRI volumes despite the LR input being simulated from HR volumes during training and resulted in lower high frequency error norm. From the ablation studies, we note that a multimodal network noticeably improves SR compared to a unimodal network and feature aggregation using concatenation and multiplicative attention performed equally well. We also highlight the leakage of information from the complementary HR input to the SR output volume and the limited value of PSNR and SSIM as evaluation metrics in such cases.
Original language | English |
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Title of host publication | Simulation and Synthesis in Medical Imaging - 7th International Workshop, SASHIMI 2022, Held in Conjunction with MICCAI 2022, Proceedings |
Editors | Can Zhao, David Svoboda, Jelmer M. Wolterink, Maria Escobar |
Publisher | Springer Science and Business Media Deutschland GmbH |
Pages | 91-100 |
Number of pages | 10 |
ISBN (Print) | 9783031169793 |
DOIs | |
State | Published - 2022 |
Externally published | Yes |
Event | 7th International Workshop on Simulation and Synthesis in Medical Imaging, SASHIMI 2022, held in conjunction with 25th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2022 - Singapore, Singapore Duration: Sep 18 2022 → Sep 18 2022 |
Publication series
Name | Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) |
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Volume | 13570 LNCS |
ISSN (Print) | 0302-9743 |
ISSN (Electronic) | 1611-3349 |
Conference
Conference | 7th International Workshop on Simulation and Synthesis in Medical Imaging, SASHIMI 2022, held in conjunction with 25th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2022 |
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Country/Territory | Singapore |
City | Singapore |
Period | 09/18/22 → 09/18/22 |
Funding
Acknowledgement. Aniket Pramanik and Roshan Reddy Upendra were supported by Roche Advanced Analytics Network internship program. Data used in the preparation of this article were also obtained from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) database (adni.loni.usc.edu) and the UK Biobank. Aniket Pramanik and Roshan Reddy Upendra were supported by Roche Advanced Analytics Network internship program. Data used in the preparation of this article were also obtained from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) database (adni.loni.usc.edu) and the UK Biobank.
Keywords
- Deep learning
- Fourier-domain loss
- Gradient guidance
- Magnetic Resonance Imaging
- Multimodal
- Super resolution