Multi-physics simulations of particle tracking in arterial geometries with a scalable moving window algorithm

Gregory Herschlag, John Gounley, Sayan Roychowdhury, Erik W. Draeger, Amanda Randles

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

5 Scopus citations

Abstract

In arterial systems, cancer cell trajectories determine metastatic cancer locations; similarly, particle trajectories determine drug delivery distribution. Predicting trajectories is challenging, as the dynamics are affected by local interactions with red blood cells, complex hemodynamic flow structure, and downstream factors such as stenoses or blockages. Direct simulation is not possible, as a single simulation of a large arterial domain with explicit red blood cells is currently intractable on even the largest supercomputers. To overcome this limitation, we present a multi-physics adaptive window algorithm, in which individual red blood cells are explicitly modeled in a small region of interest moving through a coupled arterial fluid domain. We describe the coupling between the window and fluid domains, including automatic insertion and deletion of explicit cells and dynamic tracking of cells of interest by the window. We show that this algorithm scales efficiently on heterogeneous architectures and enables us to perform large, highly-resolved particle-tracking simulations that would otherwise be intractable.

Original languageEnglish
Title of host publicationProceedings - 2019 IEEE International Conference on Cluster Computing, CLUSTER 2019
PublisherInstitute of Electrical and Electronics Engineers Inc.
ISBN (Electronic)9781728147345
DOIs
StatePublished - Sep 2019
Event2019 IEEE International Conference on Cluster Computing, CLUSTER 2019 - Albuquerque, United States
Duration: Sep 23 2019Sep 26 2019

Publication series

NameProceedings - IEEE International Conference on Cluster Computing, ICCC
Volume2019-September
ISSN (Print)1552-5244

Conference

Conference2019 IEEE International Conference on Cluster Computing, CLUSTER 2019
Country/TerritoryUnited States
CityAlbuquerque
Period09/23/1909/26/19

Funding

Research reported in this publication was supported by the Office of the Director of the National Institutes of Health under Award Number DP5OD019876. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health. This research used resources of the Oak Ridge Leadership Computing Facility, which is a DOE Office of Science User Facility supported under Contract DE-AC05-00OR22725. Compute time on Summit was provided through the ORNL Director’s Discretionary Program. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344. This manuscript has been authored by UT-Battelle, LLC under Contract No. DE-AC05-00OR22725 with the U.S. Department of Energy. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes. The Department of Energy will provide public access to these results of federally sponsored research in accordance with the DOE Public Access Plan (http://energy.gov/downloads/doe-public-access-plan).

FundersFunder number
DOE Office of Science User Facility supportedDE-AC05-00OR22725
LLC
Oak
UT-Battelle
National Institutes of HealthDP5OD019876
U.S. Department of Energy
Office of the Director
Lawrence Livermore National LaboratoryDE-AC52-07NA27344

    Keywords

    • Cellular trajectory
    • Heterogeneous computing
    • Immersed Boundary
    • Lattice Boltzmann

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