Longitudinal Effects on Plant Species Involved in Agriculture and Pandemic Emergence Undergoing Changes in Abiotic Stress

Mikaela Cashman, Verónica G.Melesse Vergara, John Lagergren, Matthew Lane, Jean Merlet, Mikaela Atkinson, Jared Streich, Christopher Bradburne, Raina Plowright, Wayne Joubert, Daniel Jacobson

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

In this work we identify changes in high-resolution zones across the globe linked by environmental similarity that have implications for agriculture, bioenergy, and zoonosis. We refine exhaustive vector comparison methods with improved similarity metrics as well as provide multiple methods of amalgamation across 744 months of climatic data. The results of the vector comparison are captured as networks which are analyzed using static and longitudinal comparison methods to reveal locations around the globe experiencing dramatic changes in abiotic stress. Specifically we (i) incorporate updated similarity scores and provide a comparison between similarity metrics, (ii) implement a new feature for resource optimization, (iii) compare an agglomerative view to a longitudinal view, (iv) compare across 2-way and 3-way vector comparisons, (v) implement a new form of analysis, and (vi) demonstrate biological applications and discuss implications across a diverse set of species distributions by detecting changes that affect their habitats. Species of interest are related to agriculture (e.g., coffee, wine, chocolate), bioenergy (e.g., poplar, switchgrass, pennycress), as well as those living in zones of concern for zoonotic spillover that may lead to pandemics (e.g., eucalyptus, flying foxes).

Original languageEnglish
Title of host publicationProceedings of the Platform for Advanced Scientific Computing Conference, PASC 2023
PublisherAssociation for Computing Machinery, Inc
ISBN (Electronic)9798400701900
DOIs
StatePublished - Jun 26 2023
Event2023 Platform for Advanced Scientific Computing Conference, PASC 2023 - Davos, Switzerland
Duration: Jun 26 2023Jun 28 2023

Publication series

NameProceedings of the Platform for Advanced Scientific Computing Conference, PASC 2023

Conference

Conference2023 Platform for Advanced Scientific Computing Conference, PASC 2023
Country/TerritorySwitzerland
CityDavos
Period06/26/2306/28/23

Funding

This research used resources of the Oak Ridge Leadership Computing Facility, which is a DOE Office of Science User Facility supported under Contract DE-AC05-00OR22725. Funding was also provided by the Integrated Pennycress Resilience Project (IPReP), the Center for Bioenergy Innovation (CBI), and the DOE Systems Biology Knowledgebase (KBase), all of which are supported by the Genomic Sciences Program of Office of Biological and Environmental Research in the DOE Office of Science. KBase is funded under Award Numbers DE-AC02-05CH11231, DE-AC02-06CH11357, DE-AC05-00OR22725, and DE-AC02-98CH10886. The authors would also like to acknowledge funding from the U.S. National Science Foundation (EF-2133763). This manuscript has been co-authored by UT-Battelle, LLC under Contract No. DE-AC05-00OR22725 with the U.S. Department of Energy. The United States Government This research used resources of the Oak Ridge Leadership Computing Facility, which is a DOE Office of Science User Facility supported under Contract DE-AC05-00OR22725. Funding was also provided by the Integrated Pennycress Resilience Project (IPReP), the Center for Bioenergy Innovation (CBI), and the DOE Systems Biology Knowledgebase (KBase), all of which are supported by the Genomic Sciences Program of Office of Biological and Environmental Research in the DOE Office of Science. KBase is funded under Award Numbers DE-AC02-05CH11231, DE-AC02-06CH11357, DEAC05- 00OR22725, and DE-AC02-98CH10886. The authors would also like to acknowledge funding from the U.S. National Science Foundation (EF-2133763). This manuscript has been co-authored by UT-Battelle, LLC under Contract No. DE-AC05-00OR22725 with the U.S. Department of Energy. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a nonexclusive, paid-up, irrevocable, worldwide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes. The Department of Energy will provide public access to these results of federally sponsored research in accordance with the DOE Public Access Plan (http://energy.gov/downloads/doe-public-access-plan).

FundersFunder number
DOE Public Access Plan
DOE Systems Biology KnowledgebaseDE-AC02-05CH11231, DE-AC02-98CH10886, DE-AC02-06CH11357
United States Government
National Science FoundationEF-2133763
U.S. Department of Energy
Office of ScienceDE-AC05-00OR22725
Center for Bioenergy Innovation
UT-Battelle

    Keywords

    • climate analysis
    • high performance computing

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