Abstract
We model the hydration contribution to short-range electrostatic/dispersion protein interactions embodied in the osmotic second virial coefficient, B 2, by adopting a quasi-chemical description in which water molecules associated with the protein are identified through explicit molecular dynamics simulations. These water molecules reduce the surface complementarity of highly favorable short-range interactions, and therefore can play an important role in mediating protein-protein interactions. Here we examine this quasi-chemical view of hydration by predicting the interaction part of B2 and comparing our results with those derived from light-scattering measurements of B 2 for staphylococcal nuclease, lysozyme, and chymotrypsinogen at 25°C as a function of solution pH and ionic strength. We find that short-range protein interactions are influenced by water molecules strongly associated with a relatively small fraction of the protein surface. However, the effect of these strongly associated water molecules on the surface complementarity of short-range protein interactions is significant, and must be taken into account for an accurate description of B2. We also observe remarkably similar hydration behavior for these proteins despite substantial differences in their three-dimensional structures and spatial charge distributions, suggesting a general characterization of protein hydration.
Original language | English |
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Pages (from-to) | 1564-1573 |
Number of pages | 10 |
Journal | Biophysical Journal |
Volume | 89 |
Issue number | 3 |
DOIs | |
State | Published - Sep 2005 |
Externally published | Yes |
Funding
Financial support from the National Science Foundation (grants No. BES-0078491 and No. BES-0078844), a Burroughs Wellcome Fund Predoctoral Fellowship for A. Paliwal, and a Howard Hughes Undergraduate Research Fellowship for D. Abras are gratefully acknowledged. We also thank the Ohio Supercomputing Center for a grant of computer time.
Funders | Funder number |
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National Science Foundation | BES-0078844, BES-0078491 |
Directorate for Engineering | 0078844, 0078491 |
Burroughs Wellcome Fund |