Inferring Plant Acclimation and Improving Model Generalizability With Differentiable Physics-Informed Machine Learning of Photosynthesis

Doaa Aboelyazeed, Chonggang Xu, Lianhong Gu, Xiangzhong Luo, Jiangtao Liu, Kathryn Lawson, Chaopeng Shen

Research output: Contribution to journalArticlepeer-review

Abstract

Net photosynthesis (AN) is a key component of the global carbon cycle influencing climate feedback over decadal scales. Although plant acclimation to environmental changes can modify AN, traditional vegetation models in Earth system models (ESMs) often rely on plant functional type (PFT)-specific parameterizations or simplified acclimation assumptions limiting generalizability across time, space, and PFTs. In this study, we developed a differentiable photosynthesis model to learn the environmental dependencies ofVc,max25 (maximum carboxylation rate at 25°C, representing photosynthetic capacity), as this genre of hybrid physics-informed machine learning can seamlessly train neural networks and process-based equations together. Compared to PFT-specific parameterization of Vc,max25, learning the environment dependencies of key photosynthetic parameters improved model spatiotemporal generalizability. Applying environmental acclimation to Vc,max25 led to substantial variations in global mean AN indicating the need to address acclimation in ESMs. The model effectively captured multivariate observations (Vc,max25, AN, and stomatal conductance (gs)) simultaneously with multivariate constraints, improving generalization across space and PFTs. It also learned sensible acclimation relationships of Vc,max25 to different environmental conditions. The model explained more than 54%, 57%, and 62% of the variance of AN, gs, and Vc,max25, respectively, presenting a first global-scale spatial test benchmark of AN and gs. These results highlight the potential for differentiable modeling to enhance process-based modules in ESMs and effectively leverage information from large, multivariate data sets.

Original languageEnglish
Article numbere2024JG008552
JournalJournal of Geophysical Research: Biogeosciences
Volume130
Issue number7
DOIs
StatePublished - Jul 2025

Funding

We thank the data providers for making available the data sets used in this study. We also appreciate the reviewers and editor for their insightful feedback and helpful suggestions. This work was supported primarily by the U.S. Department of Energy, Office of Science, under award number DE‐SC0021979. CX acknowledges support through RUBISCO Science Focus Area (SFA) by DOE Office of Science, Biological and Environmental Research (BER) Regional & Global Model Analysis program.

Keywords

  • Farquhar
  • V
  • differentiable modeling
  • photosynthesis
  • physics-informed machine learning
  • stomatal conductance

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