Incorporating microbial dormancy dynamics into soil decomposition models to improve quantification of soil carbon dynamics of northern temperate forests

  • Yujie He
  • , Jinyan Yang
  • , Qianlai Zhuang
  • , Jennifer W. Harden
  • , Anthony D. McGuire
  • , Yaling Liu
  • , Gangsheng Wang
  • , Lianhong Gu

Research output: Contribution to journalArticlepeer-review

33 Scopus citations

Abstract

Soil carbon dynamics of terrestrial ecosystems play a significant role in the global carbon cycle. Microbial-based decomposition models have seen much growth recently for quantifying this role, yet dormancy as a common strategy used by microorganisms has not usually been represented and tested in these models against field observations. Here we developed an explicit microbial-enzyme decomposition model and examined model performance with and without representation of microbial dormancy at six temperate forest sites of different forest types. We then extrapolated the model to global temperate forest ecosystems to investigate biogeochemical controls on soil heterotrophic respiration and microbial dormancy dynamics at different temporal-spatial scales. The dormancy model consistently produced better match with field-observed heterotrophic soil CO2 efflux (RH) than the no dormancy model. Our regional modeling results further indicated that models with dormancy were able to produce more realistic magnitude of microbial biomass (<2% of soil organic carbon) and soil RH (7.5 ± 2.4 Pg C yr-1). Spatial correlation analysis showed that soil organic carbon content was the dominating factor (correlation coefficient = 0.4-0.6) in the simulated spatial pattern of soil RH with both models. In contrast to strong temporal and local controls of soil temperature and moisture on microbial dormancy, our modeling results showed that soil carbon-to-nitrogen ratio (C:N) was a major regulating factor at regional scales (correlation coefficient = -0.43 to -0.58), indicating scale-dependent biogeochemical controls on microbial dynamics. Our findings suggest that incorporating microbial dormancy could improve the realism of microbial-based decomposition models and enhance the integration of soil experiments and mechanistically based modeling.

Original languageEnglish
Pages (from-to)2596-2611
Number of pages16
JournalJournal of Geophysical Research: Biogeosciences
Volume120
Issue number12
DOIs
StatePublished - Dec 2015

Funding

We would like to thank Xiaofeng Xu for his suggestions on an earlier version of this manuscript and Yang Bai for his helpful information regarding partitioning AmeriFlux data. We also would like to thank AmeriFlux PI Dr. Beverly Law for making these longterm observations publicly available. All data needed for reproduction of this study are available online (https://drive.google.com/folderview?id=0B081GsjCQ_JucnpQUGNyeU5hckk&amp;usp=sharing) and also upon request. This research is partly supported with funding to Q.Z. through NSF projects (DEB-#0919331 and NSF-0630319), the NASA Land Use and Land Cover Change program (NASA-NNX09AI26G), Department of Energy (DE-FG02-08ER64599), and the NSF Division of Information &amp; Intelligent Systems (NSF-1028291). Data from analyses and figures will be archived in the Purdue University Research Repository and can be accessed by contacting the corresponding author (Q.Z.). Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

Keywords

  • Michaelis-Menten kinetics
  • microbial dormancy
  • microbial life history traits
  • soil C:N ratio
  • soil heterotrophic respiration
  • temperate forest ecosystem

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