In silico analysis of jute SSR library and experimental verification of assembly

Rozalynne Samira; Mahdi Muhammad Moosa; Md Maksudul Alam; Shamima Islam Keka; Haseena Khan

In silico analysis of jute SSR library and experimental verification of assembly

Rozalynne Samira, Mahdi Muhammad Moosa, Md Maksudul Alam, Shamima Islam Keka, Haseena Khan

Systems and Decision Sciences

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11 Scopus citations

Abstract

Jute (Corchorus spp.) is the second most important fibre producing plant. Till date the study of jute at the molecular level has been very brief. Here we report the result of bioinformatics analyses of two jute Simple Sequence Repeat (SSR) libraries. The analysis reveals presence of nuclear, chloroplast and mitochondrial genes related to signalling pathway, metabolic and functional processes of jute biology. We have also verified experimentally some of the assemblies predicted by bioinformatics analysis.

Original language	English
Pages (from-to)	57-65
Number of pages	9
Journal	Plant OMICS
Volume	3
Issue number	2
State	Published - Mar 2010

Keywords

Bioinformatics analysis
Corchorus olitorius
Gene prediction
Jute
SSR library

Cite this

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abstract = "Jute (Corchorus spp.) is the second most important fibre producing plant. Till date the study of jute at the molecular level has been very brief. Here we report the result of bioinformatics analyses of two jute Simple Sequence Repeat (SSR) libraries. The analysis reveals presence of nuclear, chloroplast and mitochondrial genes related to signalling pathway, metabolic and functional processes of jute biology. We have also verified experimentally some of the assemblies predicted by bioinformatics analysis.",

keywords = "Bioinformatics analysis, Corchorus olitorius, Gene prediction, Jute, SSR library",

author = "Rozalynne Samira and Moosa, {Mahdi Muhammad} and Alam, {Md Maksudul} and Keka, {Shamima Islam} and Haseena Khan",

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AU - Samira, Rozalynne

AU - Moosa, Mahdi Muhammad

AU - Alam, Md Maksudul

AU - Keka, Shamima Islam

AU - Khan, Haseena

PY - 2010/3

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N2 - Jute (Corchorus spp.) is the second most important fibre producing plant. Till date the study of jute at the molecular level has been very brief. Here we report the result of bioinformatics analyses of two jute Simple Sequence Repeat (SSR) libraries. The analysis reveals presence of nuclear, chloroplast and mitochondrial genes related to signalling pathway, metabolic and functional processes of jute biology. We have also verified experimentally some of the assemblies predicted by bioinformatics analysis.

AB - Jute (Corchorus spp.) is the second most important fibre producing plant. Till date the study of jute at the molecular level has been very brief. Here we report the result of bioinformatics analyses of two jute Simple Sequence Repeat (SSR) libraries. The analysis reveals presence of nuclear, chloroplast and mitochondrial genes related to signalling pathway, metabolic and functional processes of jute biology. We have also verified experimentally some of the assemblies predicted by bioinformatics analysis.

KW - Bioinformatics analysis

KW - Corchorus olitorius

KW - Gene prediction

KW - Jute

KW - SSR library

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AN - SCOPUS:79957796046

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JO - Plant OMICS

JF - Plant OMICS

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In silico analysis of jute SSR library and experimental verification of assembly

Abstract

Keywords

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