Implementation of a self-consistent slab model of bilayer structure in the SasView suite

Luoxi Tan, James G. Elkins, Brian H. Davison, Elizabeth G. Kelley, Jonathan Nickels

Research output: Contribution to journalArticlepeer-review

13 Scopus citations

Abstract

Slab models are simple and useful structural descriptions which have long been used to describe lyotropic lamellar phases, such as lipid bilayers. Typically, slab models assume a midline symmetry and break a bilayer structure into three pieces, a central solvent-free core and two symmetric outer layers composed of the soluble portion of the amphiphile and associated solvent. This breakdown matches reasonably well to the distribution of neutron scattering length density and therefore is a convenient and common approach for the treatment of small-angle scattering data. Here, an implementation of this model within the SasView software suite is reported. The implementation is intended to provide physical consistency through the area per amphiphile molecule and number of solvent molecules included within the solvent-exposed outer layer. The proper use of this model requires knowledge of (or good estimates for) the amphiphile and solvent molecule volume and atomic composition, ultimately providing a self-consistent data treatment with only two free parameters: the lateral area per amphiphile molecule and the number of solvent molecules included in the outer region per amphiphile molecule. The use of this code is demonstrated in the fitting of standard lipid bilayer data sets, obtaining structural parameters consistent with prior literature and illustrating the typical and ideal cases of fitting for neutron scattering data obtained using single or multiple contrast conditions. While demonstrated here for lipid bilayers, this model is intended for general application to block copolymers, surfactants, and other lyotropic lamellar phase structures for which a slab model is able to reasonably estimate the neutron scattering length density/electron-density profile of inner and outer layers of the lamellae.

Original languageEnglish
Pages (from-to)363-370
Number of pages8
JournalJournal of Applied Crystallography
Volume54
DOIs
StatePublished - Feb 1 2021

Funding

This research was supported by the Genomic Sciences Program, Office of Biological and Environmental Research, US Department of Energy (DOE), under contract FWP ERKP752. This work benefited from the use of the SasView application, originally developed under NSF Award DMR-0520547. SasView also contains code developed with funding from the EU Horizon 2020 programme under the SINE2020 project grant No. 654000. Access to the NGB30 SANS instrument was provided by the Center for High Resolution Neutron Scattering, a partnership between the National Institute of Standards and Technology and the National Science Foundation under agreement No. DMR-2010792.

FundersFunder number
National Science FoundationDMR-2010792
U.S. Department of EnergyFWP ERKP752
National Institute of Standards and Technology
Biological and Environmental Research
Horizon 2020 Framework Programme654000

    Keywords

    • SANS
    • SAXS
    • area per lipid
    • block copolymers
    • hydration number
    • lamellar phases
    • lipids
    • liquid crystals.
    • membranes
    • small-angle X-ray scattering
    • small-angle neutron scattering

    Fingerprint

    Dive into the research topics of 'Implementation of a self-consistent slab model of bilayer structure in the SasView suite'. Together they form a unique fingerprint.

    Cite this