Abstract
The ability to track simulated cancer cells through the circulatory system, important for developing a mechanistic understanding of metastatic spread, pushes the limits of today's supercomputers by requiring the simulation of large fluid volumes at cellular-scale resolution. To overcome this challenge, we introduce a new adaptive physics refinement (APR) method that captures cellular-scale interaction across large domains and leverages a hybrid CPU-GPU approach to maximize performance. Through algorithmic advances that integrate multi-physics and multi-resolution models, we establish a finely resolved window with explicitly modeled cells coupled to a coarsely resolved bulk fluid domain. In this work we present multiple validations of the APR framework by comparing against fully resolved fluid-structure interaction methods and employ techniques, such as latency hiding and maximizing memory bandwidth, to effectively utilize heterogeneous node architectures. Collectively, these computational developments and performance optimizations provide a robust and scalable framework to enable system-level simulations of cancer cell transport.
Original language | English |
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Title of host publication | Proceedings - 2022 IEEE International Conference on Cluster Computing, CLUSTER 2022 |
Publisher | Institute of Electrical and Electronics Engineers Inc. |
Pages | 230-242 |
Number of pages | 13 |
ISBN (Electronic) | 9781665498562 |
DOIs | |
State | Published - 2022 |
Event | 2022 IEEE International Conference on Cluster Computing, CLUSTER 2022 - Heidelberg, Germany Duration: Sep 6 2022 → Sep 9 2022 |
Publication series
Name | Proceedings - IEEE International Conference on Cluster Computing, ICCC |
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Volume | 2022-September |
ISSN (Print) | 1552-5244 |
Conference
Conference | 2022 IEEE International Conference on Cluster Computing, CLUSTER 2022 |
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Country/Territory | Germany |
City | Heidelberg |
Period | 09/6/22 → 09/9/22 |
Funding
This manuscript has been authored by UT-Battelle, LLC under Contract No. DE-AC05-00OR22725 with the U.S. Department of Energy. This work was performed under the auspices of the U.S. Department of Energy by Lawrence Livermore National Laboratory under Contract DE-AC52-07NA27344. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a nonexclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes. The Department of Energy will provide public access to these results of federally sponsored research in accordance with the DOE Public Access Plan (http://energy.gov/downloads/ doe-public-access-plan). Research reported in this publication was supported by the National Science Foundation under Award Number 1943036 and National Institutes of Health under Award Number U01-CA253511. Computing support for this work came from the DOE INCITE program and the Lawrence Livermore National Laboratory (LLNL) Institutional Computing Grand Challenge program.
Keywords
- cancer metastasis
- deformable cells
- heterogeneous architectures
- immersed boundary
- multiphysics