Global parameter optimization for biokinetic modeling of simple batch experiments

Alma Mašić, Kai M. Udert, Kris Villez

Research output: Contribution to journalArticlepeer-review

8 Scopus citations

Abstract

Environmental process modeling is challenged by the lack of high quality data, stochastic variations, and nonlinear behavior. Conventionally, parameter optimization is based on stochastic sampling techniques to deal with the nonlinear behavior of the proposed models. Despite widespread use, such tools cannot guarantee globally optimal parameter estimates. It can be especially difficult in practice to differentiate between lack of algorithm convergence, convergence to a non-global local optimum, and model structure deficits. For this reason, we use a deterministic global optimization algorithm for kinetic model identification and demonstrate it with a model describing a typical batch experiment. A combination of interval arithmetic, reformulations, and relaxations allows globally optimal identification of all (six) model parameters. In addition, the results suggest that further improvements may be obtained by modification of the optimization problem or by proof of the hypothesized pseudo-convex nature of the problem suggested by our results.

Original languageEnglish
Pages (from-to)356-373
Number of pages18
JournalEnvironmental Modelling and Software
Volume85
DOIs
StatePublished - Nov 1 2016

Funding

The authors thank Dr. Dominique Bonvin (EPFL) for critical reading of our manuscript, Gabriel Kämpf for collecting the experimental data, the authors of the Spike_O toolbox ( Villez et al., 2013, 2016; Villez and Habermacher, 2016 ), Johannes Korsawe for the bounding box computation and visualization code and Nima Moshtagh for the minimal volume ellipsoid computation and visualization code. This research is made possible by Eawag Discretionary Funds (grant no.: 5221.00492.009.03 , project: DF2015/EMISSUN ).

Keywords

  • Biotechnology
  • Deterministic search
  • Global optimality
  • Kinetic modeling
  • Nitrification
  • Parameter estimation

Fingerprint

Dive into the research topics of 'Global parameter optimization for biokinetic modeling of simple batch experiments'. Together they form a unique fingerprint.

Cite this