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Exploring similarities among many species distributions

  • Scott Simmerman
  • , Jingyuan Wang
  • , James Osborne
  • , Kimberly Shook
  • , Jian Huang
  • , William Godsoe
  • , Theodore Simons

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

Collecting species presence data and then building models to predict species distribution has been long practiced in the field of ecology for the purpose of improving our understanding of species relationships with each other and with the environment. Due to limitations of computing power as well as limited means of using modeling software on HPC facilities, past species distribution studies have been unable to fully explore diverse data sets. We build a system that can, for the first time to our knowledge, leverage HPC to support effective exploration of species similarities in distribution as well as their dependencies on common environmental conditions. Our system can also compute and reveal uncertainties in the modeling results enabling domain experts to make informed judgments about the data. Our work was motivated by and centered around data collection efforts within the Great Smoky Mountains National Park that date back to the 1940s. Our findings present new research opportunities in ecology and produce actionable field-work items for biodiversity management personnel to include in their planning of daily management activities.

Original languageEnglish
Title of host publicationProceedings of the XSEDE12 Conference
Subtitle of host publicationBridging from the eXtreme to the Campus and Beyond
DOIs
StatePublished - 2012
Externally publishedYes
Event1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the Campus and Beyond, XSEDE12 - Chicago, IL, United States
Duration: Jul 16 2012Jul 19 2012

Publication series

NameACM International Conference Proceeding Series

Conference

Conference1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the Campus and Beyond, XSEDE12
Country/TerritoryUnited States
CityChicago, IL
Period07/16/1207/19/12

Keywords

  • HPC
  • parallel processing
  • species distribution modeling

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