Differential Substrate Recognition by Maltose Binding Proteins Influenced by Structure and Dynamics

Shantanu Shukla, Khushboo Bafna, Caeley Gullett, Dean A.A. Myles, Pratul K. Agarwal, Matthew J. Cuneo

Research output: Contribution to journalArticlepeer-review

20 Scopus citations

Abstract

The genome of the hyperthermophile Thermotoga maritima contains three isoforms of maltose binding protein (MBP) that are high-affinity receptors for di-, tri-, and tetrasaccharides. Two of these proteins (tmMBP1 and tmMBP2) share significant sequence identity, approximately 90%, while the third (tmMBP3) shares less than 40% identity. MBP from Escherichia coli (ecMBP) shares 35% sequence identity with the tmMBPs. This subset of MBP isoforms offers an interesting opportunity to investigate the mechanisms underlying the evolution of substrate specificity and affinity profiles in a genome where redundant MBP genes are present. In this study, the X-ray crystal structures of tmMBP1, tmMBP2, and tmMBP3 are reported in the absence and presence of oligosaccharides. tmMBP1 and tmMBP2 have binding pockets that are larger than that of tmMBP3, enabling them to bind to larger substrates, while tmMBP1 and tmMBP2 also undergo substrate-induced hinge bending motions (â52°) that are larger than that of tmMBP3 (â35°). Small-angle X-ray scattering was used to compare protein behavior in solution, and computer simulations provided insights into dynamics of these proteins. Comparing quantitative protein-substrate interactions and dynamical properties of tmMBPs with those of the promiscuous ecMBP and disaccharide selective Thermococcus litoralis MBP provides insights into the features that enable selective binding. Collectively, the results provide insights into how the structure and dynamics of tmMBP homologues enable them to differentiate between a myriad of chemical entities while maintaining their common fold.

Original languageEnglish
Pages (from-to)5864-5876
Number of pages13
JournalBiochemistry
Volume57
Issue number40
DOIs
StatePublished - Oct 9 2018

Funding

*E-mail: [email protected]. *E-mail: [email protected]. ORCID Pratul K. Agarwal: 0000-0002-3848-9492 Matthew J. Cuneo: 0000-0002-1475-6656 Funding This work was supported in part by a multi-PI grant from the National Institutes of Health to P.K.A. (GM105978). Notes The authors declare no competing financial interest.

Fingerprint

Dive into the research topics of 'Differential Substrate Recognition by Maltose Binding Proteins Influenced by Structure and Dynamics'. Together they form a unique fingerprint.

Cite this