Design, synthesis, evaluation and X-ray structural studies of potent HIV-1 protease inhibitors containing substituted oxaspirocyclic carbamates as the P2 ligands

Arun K. Ghosh, Ryan Shaktah, Ajay K. Ghosh, Megan E. Johnson, Dipendra Bhandari, Masayuki Amano, Manabu Aoki, Andrey Kovalevsky, Hiroaki Mitsuya

Research output: Contribution to journalArticlepeer-review

Abstract

We report here the design, synthesis and evaluation of a series of HIV-1 protease inhibitors that incorporate substituted oxaspirocyclic carbamate derivatives to serve as the P2 ligands. Various substituted ligand derivatives were synthesized in a racemic manner, using a tandem Prins/pinacol reaction as the key reaction. This reaction sets the relative stereochemistry of the oxaspirocyclic template in a highly diastereoselective manner. Reaction of the resulting ketone with enantiopure (S)-tert-butyl sulfinamide provided a convenient pathway to resolve the oxaspirocyclic ketone derivatives. The absolute stereochemical identity was determined by X-ray crystallography. The structure-activity studies demonstrate the effect of the stereochemistry of the oxaspirocyclic ring systems as well as the substitution effect on the aromatic ring. Several inhibitors exhibited potent HIV-1 protease inhibitory activity. One of these inhibitors displayed subnanomolar HIV-1 protease affinity and also exhibited potent antiviral activity. A high-resolution X-ray crystal structure of this inhibitor-bound HIV-1 protease show that the oxaspirocyclic P2 ligand forms an unconventional C–H⋯O bond with the backbone carboxyl group of Gly48’ and an interesting N–H … π interaction with the aromatic ring in the S2 subsite of HIV-1 protease active site.

Original languageEnglish
Article number117880
JournalEuropean Journal of Medicinal Chemistry
Volume297
DOIs
StatePublished - Nov 5 2025

Funding

This research was supported by the National Institutes of Health (Grant AI150466, AKG). X-ray data were collected on the in-house X-ray diffractometer at the Neutron Scattering Division, Oak Ridge National Laboratory (ORNL) supported by the Scientific User Facilities Division, Office of Basic Energy Sciences, U.S. Department of Energy. ORNL is managed by UT-Battelle LLC for DOE's Office of Science. This work was also supported by the Intramural Research Program of the Center for Cancer Research, National Cancer Institute, National Institutes of Health (HM), and in part by grants for the promotion of AIDS research from the Ministry of Health; grants from Welfare and Labor of Japan (HM); grants for the Research Program on HIV/AIDS from the Japan Agency for Medical Research and Development (AMED) under grant numbers JP15fk0410001 and JP16fk041001 (HM); a grant from the National Center for Global Health and Medicine (NCGM) Research Institute (HM); and a Grant-in-Aid for Scientific Research and a Grant-in-Aid for Challenging Research from the Ministry of Education, Culture, Sports, Science, and Technology of Japan (Monbu Kagakusho) (HM).

Keywords

  • Antiviral
  • Backbone binding
  • Darunavir
  • HIV-1 protease
  • Inhibitors
  • Oxaspirocyclic
  • X-ray crystal structure

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