Computational Medicine in the Exascale Computing Era: Applications at the Oak Ridge Leadership Computing Facility

Georgia D. Tourassi

doi:10.1109/JVA60410.2023.00023

Computational Medicine in the Exascale Computing Era: Applications at the Oak Ridge Leadership Computing Facility

Georgia D. Tourassi

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

Abstract

Computational medicine has revolutionized healthcare by leveraging cutting-edge computing technologies to advance medical research and improve patient outcomes. For decades, high performance computing (HPC) has been a great ally to biological modeling but over the past few years HPC use for biomedical applications has been growing steadily. With the rise of exascale computing, promising to deliver unprecedented computing power and scalability, the potential of computational medicine is even greater. This paper discusses opportunities and some challenges exascale computing presents for advancing computational medicine. In addition, the paper highlights some applications addressing pressing healthcare delivery challenges of our time.

Original language	English
Title of host publication	Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023
Editors	Shaukat Ali, Claudio A. Ardagna, Nimanthi Atukorala, Johanna Barzen, Carl K. Chang, Rong N. Chang, Jing Fan, Ismael Faro, Sebastian Feld, Geoffrey C. Fox, Zhi Jin, Frank Leymann, Florian Neukart, Salvador de la Puente, Manuel Wimmer
Publisher	Institute of Electrical and Electronics Engineers Inc.
Pages	75-79
Number of pages	5
ISBN (Electronic)	9798350328899
DOIs	https://doi.org/10.1109/JVA60410.2023.00023
State	Published - 2023
Event	2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023 - Hybrid, Chicago, United States Duration: Jul 2 2023 → Jul 8 2023

Publication series

Name	Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023

Conference

Conference	2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023
Country/Territory	United States
City	Hybrid, Chicago
Period	07/2/23 → 07/8/23

Funding

This research also used resources of the Oak Ridge Leadership Computing Facility at the Oak Ridge National Laboratory, which is supported by the DOE Office of Science under Contract No. DE-AC05-00OR22725. ACKNOWLEDGMENT This manuscript has been authored by UT-Battelle LLC under Contract No. DE-AC05-00OR22725 with the US Department of Energy (DOE). The US government retains and the publisher, by accepting the article for publication, acknowledges that the US government retains a nonexclusive, paid-up, irrevocable, worldwide license to publish or reproduce the published form of the manuscript, or allow others to do so, for US government purposes. DOE will provide public access to these results of federally sponsored research in accordance with the DOE Public Access Plan (http://energy.gov/downloads/doe-public-access-plan).

Keywords

computational medicine
exascale computing
health informatics
high performance computing

Access to Document

10.1109/JVA60410.2023.00023

Cite this

Tourassi, G. D. (2023). Computational Medicine in the Exascale Computing Era: Applications at the Oak Ridge Leadership Computing Facility. In S. Ali, C. A. Ardagna, N. Atukorala, J. Barzen, C. K. Chang, R. N. Chang, J. Fan, I. Faro, S. Feld, G. C. Fox, Z. Jin, F. Leymann, F. Neukart, S. de la Puente, & M. Wimmer (Eds.), Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023 (pp. 75-79). (Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/JVA60410.2023.00023

Tourassi, Georgia D. / Computational Medicine in the Exascale Computing Era : Applications at the Oak Ridge Leadership Computing Facility. Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023. editor / Shaukat Ali ; Claudio A. Ardagna ; Nimanthi Atukorala ; Johanna Barzen ; Carl K. Chang ; Rong N. Chang ; Jing Fan ; Ismael Faro ; Sebastian Feld ; Geoffrey C. Fox ; Zhi Jin ; Frank Leymann ; Florian Neukart ; Salvador de la Puente ; Manuel Wimmer. Institute of Electrical and Electronics Engineers Inc., 2023. pp. 75-79 (Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023).

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title = "Computational Medicine in the Exascale Computing Era: Applications at the Oak Ridge Leadership Computing Facility",

abstract = "Computational medicine has revolutionized healthcare by leveraging cutting-edge computing technologies to advance medical research and improve patient outcomes. For decades, high performance computing (HPC) has been a great ally to biological modeling but over the past few years HPC use for biomedical applications has been growing steadily. With the rise of exascale computing, promising to deliver unprecedented computing power and scalability, the potential of computational medicine is even greater. This paper discusses opportunities and some challenges exascale computing presents for advancing computational medicine. In addition, the paper highlights some applications addressing pressing healthcare delivery challenges of our time.",

keywords = "computational medicine, exascale computing, health informatics, high performance computing",

author = "Tourassi, \{Georgia D.\}",

note = "Publisher Copyright: {\textcopyright} 2023 IEEE.; 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023 ; Conference date: 02-07-2023 Through 08-07-2023",

year = "2023",

doi = "10.1109/JVA60410.2023.00023",

language = "English",

series = "Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023",

publisher = "Institute of Electrical and Electronics Engineers Inc.",

pages = "75--79",

editor = "Shaukat Ali and Ardagna, \{Claudio A.\} and Nimanthi Atukorala and Johanna Barzen and Chang, \{Carl K.\} and Chang, \{Rong N.\} and Jing Fan and Ismael Faro and Sebastian Feld and Fox, \{Geoffrey C.\} and Zhi Jin and Frank Leymann and Florian Neukart and \{de la Puente\}, Salvador and Manuel Wimmer",

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Tourassi, GD 2023, Computational Medicine in the Exascale Computing Era: Applications at the Oak Ridge Leadership Computing Facility. in S Ali, CA Ardagna, N Atukorala, J Barzen, CK Chang, RN Chang, J Fan, I Faro, S Feld, GC Fox, Z Jin, F Leymann, F Neukart, S de la Puente & M Wimmer (eds), Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023. Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023, Institute of Electrical and Electronics Engineers Inc., pp. 75-79, 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023, Hybrid, Chicago, United States, 07/2/23. https://doi.org/10.1109/JVA60410.2023.00023

Computational Medicine in the Exascale Computing Era: Applications at the Oak Ridge Leadership Computing Facility. / Tourassi, Georgia D.
Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023. ed. / Shaukat Ali; Claudio A. Ardagna; Nimanthi Atukorala; Johanna Barzen; Carl K. Chang; Rong N. Chang; Jing Fan; Ismael Faro; Sebastian Feld; Geoffrey C. Fox; Zhi Jin; Frank Leymann; Florian Neukart; Salvador de la Puente; Manuel Wimmer. Institute of Electrical and Electronics Engineers Inc., 2023. p. 75-79 (Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

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N2 - Computational medicine has revolutionized healthcare by leveraging cutting-edge computing technologies to advance medical research and improve patient outcomes. For decades, high performance computing (HPC) has been a great ally to biological modeling but over the past few years HPC use for biomedical applications has been growing steadily. With the rise of exascale computing, promising to deliver unprecedented computing power and scalability, the potential of computational medicine is even greater. This paper discusses opportunities and some challenges exascale computing presents for advancing computational medicine. In addition, the paper highlights some applications addressing pressing healthcare delivery challenges of our time.

AB - Computational medicine has revolutionized healthcare by leveraging cutting-edge computing technologies to advance medical research and improve patient outcomes. For decades, high performance computing (HPC) has been a great ally to biological modeling but over the past few years HPC use for biomedical applications has been growing steadily. With the rise of exascale computing, promising to deliver unprecedented computing power and scalability, the potential of computational medicine is even greater. This paper discusses opportunities and some challenges exascale computing presents for advancing computational medicine. In addition, the paper highlights some applications addressing pressing healthcare delivery challenges of our time.

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KW - exascale computing

KW - health informatics

KW - high performance computing

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M3 - Conference contribution

AN - SCOPUS:85184852432

T3 - Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023

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BT - Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023

A2 - Ali, Shaukat

A2 - Ardagna, Claudio A.

A2 - Atukorala, Nimanthi

A2 - Barzen, Johanna

A2 - Chang, Carl K.

A2 - Chang, Rong N.

A2 - Fan, Jing

A2 - Faro, Ismael

A2 - Feld, Sebastian

A2 - Fox, Geoffrey C.

A2 - Jin, Zhi

A2 - Leymann, Frank

A2 - Neukart, Florian

A2 - de la Puente, Salvador

A2 - Wimmer, Manuel

PB - Institute of Electrical and Electronics Engineers Inc.

Y2 - 2 July 2023 through 8 July 2023

ER -

Tourassi GD. Computational Medicine in the Exascale Computing Era: Applications at the Oak Ridge Leadership Computing Facility. In Ali S, Ardagna CA, Atukorala N, Barzen J, Chang CK, Chang RN, Fan J, Faro I, Feld S, Fox GC, Jin Z, Leymann F, Neukart F, de la Puente S, Wimmer M, editors, Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023. Institute of Electrical and Electronics Engineers Inc. 2023. p. 75-79. (Proceedings - 2023 IEEE John Vincent Atanasoff Symposium on Modern Computing, JVA 2023). doi: 10.1109/JVA60410.2023.00023

Computational Medicine in the Exascale Computing Era: Applications at the Oak Ridge Leadership Computing Facility

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