Complete genome sequence of Thauera aminoaromatica strain MZ1T

Ke Jiang; John Sanseverino; Archana Chauhan; Susan Lucas; Alex Copeland; Alla Lapidus; Tijana Glavina Del Rio; Eileen Dalin; Hope Tice; David Bruce; Lynne Goodwin; Sam Pitluck; David Sims; Thomas Brettin; John C. Detter; Cliff Han; Y. J. Chang; Frank Larimer; Miriam Land; Loren Hauser; Nikos C. Kyrpides; Natalia Mikhailova; Scott Moser; Patricia Jegier; Dan Close; Jennifer M. DeBruyn; Ying Wang; Alice C. Layton; Michael S. Allen; Gary S. Sayler

doi:10.4056/sigs.2696029

Complete genome sequence of Thauera aminoaromatica strain MZ1T

Ke Jiang, John Sanseverino, Archana Chauhan, Susan Lucas, Alex Copeland, Alla Lapidus, Tijana Glavina Del Rio, Eileen Dalin, Hope Tice, David Bruce, Lynne Goodwin, Sam Pitluck, David Sims, Thomas Brettin, John C. Detter, Cliff Han, Y. J. Chang, Frank Larimer, Miriam Land, Loren HauserNikos C. Kyrpides, Natalia Mikhailova, Scott Moser, Patricia Jegier, Dan Close, Jennifer M. DeBruyn, Ying Wang, Alice C. Layton, Michael S. Allen, Gary S. Sayler

Research output: Contribution to journal › Article › peer-review

49 Scopus citations

Abstract

Thauera aminoaromatica strain MZ1T, an isolate belonging to genus Thauera, of the family Rhodocyclaceae and the class the Betaproteobacteria, has been characterized for its ability to produce abundant exopolysaccharide and degrade various aromatic compounds with nitrate as an electron acceptor. These properties, if fully understood at the genome-sequence level, can aid in environmental processing of organic matter in anaerobic cycles by short-circuiting a central anaerobic metabolite, acetate, from microbiological conversion to methane, a critical greenhouse gas. Strain MZ1T is the first strain from the genus Thauera with a completely sequenced genome. The 4,496,212 bp chromosome and 78,374 bp plasmid contain 4,071 protein-coding and 71 RNA genes, and were sequenced as part of the DOE Community Sequencing Program CSP_776774.

Original language	English
Pages (from-to)	325-335
Number of pages	11
Journal	Standards in Genomic Sciences
Volume	6
Issue number	3
DOIs	https://doi.org/10.4056/sigs.2696029
State	Published - 2012
Externally published	Yes

Funding

This work was supported by the Center for Environmental Biotechnology and the University of Tennessee Waste Management Research and Education Institute and by the Director, Office of Science, Office of Biological and Environmental Research, Life Sciences Division, U.S. Department of Energy under Contract No. DE-AC02-

Funders	Funder number
Center for Environmental Biotechnology
University of Tennessee Waste Management Research and Education Institute
U.S. Department of Energy	DE-AC02
Office of Science
Biological and Environmental Research
Life Sciences Division, Army Research Office

Keywords

Genome
MZ1T
Thauera aminoaromatica

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10.4056/sigs.2696029

Cite this

Jiang, K., Sanseverino, J., Chauhan, A., Lucas, S., Copeland, A., Lapidus, A., Del Rio, T. G., Dalin, E., Tice, H., Bruce, D., Goodwin, L., Pitluck, S., Sims, D., Brettin, T., Detter, J. C., Han, C., Chang, Y. J., Larimer, F., Land, M., ... Sayler, G. S. (2012). Complete genome sequence of Thauera aminoaromatica strain MZ1T. Standards in Genomic Sciences, 6(3), 325-335. https://doi.org/10.4056/sigs.2696029

@article{0285681a0bcf4aa2b1fb208c67a8b331,

title = "Complete genome sequence of Thauera aminoaromatica strain MZ1T",

abstract = "Thauera aminoaromatica strain MZ1T, an isolate belonging to genus Thauera, of the family Rhodocyclaceae and the class the Betaproteobacteria, has been characterized for its ability to produce abundant exopolysaccharide and degrade various aromatic compounds with nitrate as an electron acceptor. These properties, if fully understood at the genome-sequence level, can aid in environmental processing of organic matter in anaerobic cycles by short-circuiting a central anaerobic metabolite, acetate, from microbiological conversion to methane, a critical greenhouse gas. Strain MZ1T is the first strain from the genus Thauera with a completely sequenced genome. The 4,496,212 bp chromosome and 78,374 bp plasmid contain 4,071 protein-coding and 71 RNA genes, and were sequenced as part of the DOE Community Sequencing Program CSP_776774.",

keywords = "Genome, MZ1T, Thauera aminoaromatica",

author = "Ke Jiang and John Sanseverino and Archana Chauhan and Susan Lucas and Alex Copeland and Alla Lapidus and {Del Rio}, {Tijana Glavina} and Eileen Dalin and Hope Tice and David Bruce and Lynne Goodwin and Sam Pitluck and David Sims and Thomas Brettin and Detter, {John C.} and Cliff Han and Chang, {Y. J.} and Frank Larimer and Miriam Land and Loren Hauser and Kyrpides, {Nikos C.} and Natalia Mikhailova and Scott Moser and Patricia Jegier and Dan Close and DeBruyn, {Jennifer M.} and Ying Wang and Layton, {Alice C.} and Allen, {Michael S.} and Sayler, {Gary S.}",

year = "2012",

doi = "10.4056/sigs.2696029",

language = "English",

volume = "6",

pages = "325--335",

journal = "Standards in Genomic Sciences",

issn = "1944-3277",

publisher = "BioMed Central",

number = "3",

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Jiang, K, Sanseverino, J, Chauhan, A, Lucas, S, Copeland, A, Lapidus, A, Del Rio, TG, Dalin, E, Tice, H, Bruce, D, Goodwin, L, Pitluck, S, Sims, D, Brettin, T, Detter, JC, Han, C, Chang, YJ, Larimer, F, Land, M, Hauser, L, Kyrpides, NC, Mikhailova, N, Moser, S, Jegier, P, Close, D, DeBruyn, JM, Wang, Y, Layton, AC, Allen, MS & Sayler, GS 2012, 'Complete genome sequence of Thauera aminoaromatica strain MZ1T', Standards in Genomic Sciences, vol. 6, no. 3, pp. 325-335. https://doi.org/10.4056/sigs.2696029

TY - JOUR

T1 - Complete genome sequence of Thauera aminoaromatica strain MZ1T

AU - Jiang, Ke

AU - Sanseverino, John

AU - Chauhan, Archana

AU - Lucas, Susan

AU - Copeland, Alex

AU - Lapidus, Alla

AU - Del Rio, Tijana Glavina

AU - Dalin, Eileen

AU - Tice, Hope

AU - Bruce, David

AU - Goodwin, Lynne

AU - Pitluck, Sam

AU - Sims, David

AU - Brettin, Thomas

AU - Detter, John C.

AU - Han, Cliff

AU - Chang, Y. J.

AU - Larimer, Frank

AU - Land, Miriam

AU - Hauser, Loren

AU - Kyrpides, Nikos C.

AU - Mikhailova, Natalia

AU - Moser, Scott

AU - Jegier, Patricia

AU - Close, Dan

AU - DeBruyn, Jennifer M.

AU - Wang, Ying

AU - Layton, Alice C.

AU - Allen, Michael S.

AU - Sayler, Gary S.

PY - 2012

Y1 - 2012

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AB - Thauera aminoaromatica strain MZ1T, an isolate belonging to genus Thauera, of the family Rhodocyclaceae and the class the Betaproteobacteria, has been characterized for its ability to produce abundant exopolysaccharide and degrade various aromatic compounds with nitrate as an electron acceptor. These properties, if fully understood at the genome-sequence level, can aid in environmental processing of organic matter in anaerobic cycles by short-circuiting a central anaerobic metabolite, acetate, from microbiological conversion to methane, a critical greenhouse gas. Strain MZ1T is the first strain from the genus Thauera with a completely sequenced genome. The 4,496,212 bp chromosome and 78,374 bp plasmid contain 4,071 protein-coding and 71 RNA genes, and were sequenced as part of the DOE Community Sequencing Program CSP_776774.

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KW - Thauera aminoaromatica

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SN - 1944-3277

VL - 6

SP - 325

EP - 335

JO - Standards in Genomic Sciences

JF - Standards in Genomic Sciences

IS - 3

ER -

Complete genome sequence of Thauera aminoaromatica strain MZ1T

Abstract

Funding

Keywords

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