Collective Excitations in Protein as a Measure of Balance between its Softness and Rigidity

Utsab R. Shrestha, Debsindhu Bhowmik, Kurt W. Van Delinder, Eugene Mamontov, Hugh O'Neill, Qiu Zhang, Ahmet Alatas, Xiang Qiang Chu

Research output: Contribution to journalArticlepeer-review

3 Scopus citations

Abstract

In this article, we elucidate the protein activity from the perspective of protein softness and flexibility by studying the collective phonon-like excitations in a globular protein, human serum albumin (HSA), and taking advantage of the state-of-the-art inelastic X-ray scattering (IXS) technique. Such excitations demonstrate that the protein becomes softer upon thermal denaturation due to disruption of weak noncovalent bonds. On the other hand, no significant change in the local excitations is detected in ligand- (drugs) bound HSA compared to the ligand-free HSA. Our results clearly suggest that the protein conformational flexibility and rigidity are balanced by the native protein structure for biological activity.

Original languageEnglish
Pages (from-to)923-930
Number of pages8
JournalJournal of Physical Chemistry B
Volume121
Issue number5
DOIs
StatePublished - Feb 9 2017

Funding

FundersFunder number
National Science Foundation1616008

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