Byte-precision level of detail processing for variable precision analytics

John Jenkins, Eric R. Schendel, Sriram Lakshminarasimhan, David A. Boyuka, Terry Rogers, Stephane Ethier, Robert Ross, Scott Klasky, Nagiza F. Samatova

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

15 Scopus citations

Abstract

I/O bottlenecks in HPC applications are becoming a more pressing problem as compute capabilities continue to outpace I/O capabilities. While double-precision simulation data often must be stored losslessly, the loss of some of the fractional component may introduce acceptably small errors to many types of scientific analyses. Given this observation, we develop a precision level of detail (APLOD) library, which partitions double-precision datasets along user-defined byte boundaries. APLOD parameterizes the analysis accuracy-I/O performance tradeoff, bounds maximum relative error, maintains I/O access patterns compared to full precision, and operates with low overhead. Using ADIOS as an I/O use-case, we show proportional reduction in disk access time to the degree of precision. Finally, we show the effects of partial precision analysis on accuracy for operations such as k-means and Fourier analysis, finding a strong applicability for the use of varying degrees of precision to reduce the cost of analyzing extreme-scale data.

Original languageEnglish
Title of host publication2012 International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2012
DOIs
StatePublished - 2012
Event2012 24th International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2012 - Salt Lake City, UT, United States
Duration: Nov 10 2012Nov 16 2012

Publication series

NameInternational Conference for High Performance Computing, Networking, Storage and Analysis, SC
ISSN (Print)2167-4329
ISSN (Electronic)2167-4337

Conference

Conference2012 24th International Conference for High Performance Computing, Networking, Storage and Analysis, SC 2012
Country/TerritoryUnited States
CitySalt Lake City, UT
Period11/10/1211/16/12

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