Animal movement estimation and network-based epidemic modeling: Illustration for the swine industry in Iowa (US)

Qihui Yang, Beatriz Martínez-López, Sifat Afroj Moon, Jose Pablo Gomez-Vazquez, Caterina Scoglio

Research output: Contribution to journalArticlepeer-review

Abstract

Animal movement plays a critical role in disease transmission between farms. However, in the United States, the lack of available animal shipment data, sometimes coupled with a lack of detailed information about farm demographics and characteristics, presents great challenges for epidemic modeling and prediction. In this study, we proposed a new method based on the maximum entropy to generate “synthetic” animal movement networks, considering available statistics about the premises operation type, operation size, and the distance between premises. We illustrated our method for the swine movement networks in Iowa and performed network analyses to gain insights into the swine industry. We then applied the generated networks to a network-based epidemic model to identify potential system vulnerabilities in terms of disease transmission. The model was parameterized for African Swine Fever (ASF) as the US swine industry is quite concerned about this disease. Results show that premises with a central role in the network are more vulnerable to disease outbreaks and play an important role in disease spread. Simulations with outbreaks starting from random farms reveal no significant large outbreaks, indicating the system’s relative robustness against arbitrary disease introductions. However, outbreaks originating from high out-degree farms can lead to large epidemic sizes. This underscores the importance for stakeholders and policymakers to continue improving animal movement records and traceability programs in the US and the value of making that data available to epidemiologists and modelers to better understand risk and inform strategies aimed to cost-effectively prevent and control disease transmission. Our approach could be easily adapted to estimate movement networks in other animal production systems and to inform disease spread models for various infectious diseases.

Original languageEnglish
Article numbere0326234
JournalPLoS ONE
Volume20
Issue number6 June
DOIs
StatePublished - Jun 2025

Funding

This material is based upon work supported by the U.S. Department of Homeland Security through the Cross-Border Threat Screening and Supply Chain Defense under Grant Award Number 18STCBT00001, the USDA National Institute of Food and Agriculture under Grant Award Number 2019-67015-28981, and the USDA ARS Agreement Number 58-3022-1-010. The views and conclusions contained in this document are those of the authors and should not be interpreted as necessarily representing the official policies, either expressed or implied, of the U.S. Department of Homeland Security, or U.S. Department of Agriculture. There was no additional external funding received for this study. The authors would like to acknowledge Dr. Aram Vajdi for helpful insights into the network-based model. This manuscript has been co-authored by UT-Battelle, LLC under Contract No. DE-AC05–00OR22725 with the U.S. Department of Energy. The United States Government retains and the publisher, by accepting the article for publication, acknowledges that the United States Government retains a non-exclusive, paid-up, irrevocable, world-wide license to publish or reproduce the published form of this manuscript, or allow others to do so, for United States Government purposes. The Department of Energy will provide public access to these results of federally sponsored research in accordance with the DOE Public Access Plan (http://energy.gov/downloads/doe-public-access-plan).

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