Achieving 3D imaging through focus stacking

J. Wlodek; K. J. Gofron; Y. Q. Cai

doi:10.1063/1.5084619

Achieving 3D imaging through focus stacking

J. Wlodek
, K. J. Gofron
, Y. Q. Cai

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

4 Scopus citations

Abstract

Newly developed 3D reconstruction technology has many uses ranging from facial recognition, self-driving vehicles, and producing accurate models of samples. To utilize 3D reconstruction, a depth map of the sample must be generated from a series of images. This can be done using stereoscopic 3D, or in the case of a fixed camera (such as the 10ID On-Axis Microscope at NSLS-II used for this paper) through focus stacking. This paper will explain how focus stacking can be used to generate in-focus images at very shallow depth of fields, and merge these images to create depth maps and 3D models.

Original language	English
Title of host publication	Proceedings of the 13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018
Editors	Shangjr Gwo, Tzu-Hung Chuang, Yao-Chang Lee, Ashish Atma Chainani, Yu-Chun Chuang, Chun-Chieh Wang, Di-Jing Huang, Der-Hsin Wei, Gwo-Huei Luo, Jyh-Fu Lee, Hong-Ji Lin, Gung-Chian Ying, Cheng-Maw Cheng, Jhih-Min Lin, Jin-Ming Chen, Ping-Jung Chou, Ching-Shiang Huang, Yaw-Wen Yang, U-Ser Jeng, Chin-Cheng Kuo, Hwo-Shuenn Sheu, Shih-Chun Chung, Wai-Keung Lau, Hsin-Yi Lee, Mau-Tsu Tang
Publisher	American Institute of Physics Inc.
ISBN (Electronic)	9780735417823
DOIs	https://doi.org/10.1063/1.5084619
State	Published - Jan 15 2019
Externally published	Yes
Event	13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018 - Taipei, Taiwan, Province of China Duration: Jun 11 2018 → Jun 15 2018

Publication series

Name	AIP Conference Proceedings
Volume	2054
ISSN (Print)	0094-243X
ISSN (Electronic)	1551-7616

Conference

Conference	13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018
Country/Territory	Taiwan, Province of China
City	Taipei
Period	06/11/18 → 06/15/18

Funding

Internships Program (SULI). The work at the National Synchrotron Light Source-II, Brookhaven National Laboratory, was supported by the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences, under Contract No. DE-SC0012704. crystals used as samples in certain tests. We also acknowledge the 10ID beamline team for their cooperation and support for this project. This project was supported in part by the Brookhaven National Laboratory (BNL), the BNL Photon Sciences department under the BNL Supplemental Undergraduate Research Program (SURP), and the Office of Workforce Development for Teachers and Scientists (WDTS) under the Science Undergraduate Laboratory

Access to Document

10.1063/1.5084619

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Wlodek, J., Gofron, K. J., & Cai, Y. Q. (2019). Achieving 3D imaging through focus stacking. In S. Gwo, T.-H. Chuang, Y.-C. Lee, A. A. Chainani, Y.-C. Chuang, C.-C. Wang, D.-J. Huang, D.-H. Wei, G.-H. Luo, J.-F. Lee, H.-J. Lin, G.-C. Ying, C.-M. Cheng, J.-M. Lin, J.-M. Chen, P.-J. Chou, C.-S. Huang, Y.-W. Yang, U.-S. Jeng, C.-C. Kuo, H.-S. Sheu, S.-C. Chung, W.-K. Lau, H.-Y. Lee, ... M.-T. Tang (Eds.), Proceedings of the 13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018 Article 050001 (AIP Conference Proceedings; Vol. 2054). American Institute of Physics Inc.. https://doi.org/10.1063/1.5084619

Wlodek, J. ; Gofron, K. J. ; Cai, Y. Q. / Achieving 3D imaging through focus stacking. Proceedings of the 13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018. editor / Shangjr Gwo ; Tzu-Hung Chuang ; Yao-Chang Lee ; Ashish Atma Chainani ; Yu-Chun Chuang ; Chun-Chieh Wang ; Di-Jing Huang ; Der-Hsin Wei ; Gwo-Huei Luo ; Jyh-Fu Lee ; Hong-Ji Lin ; Gung-Chian Ying ; Cheng-Maw Cheng ; Jhih-Min Lin ; Jin-Ming Chen ; Ping-Jung Chou ; Ching-Shiang Huang ; Yaw-Wen Yang ; U-Ser Jeng ; Chin-Cheng Kuo ; Hwo-Shuenn Sheu ; Shih-Chun Chung ; Wai-Keung Lau ; Hsin-Yi Lee ; Mau-Tsu Tang. American Institute of Physics Inc., 2019. (AIP Conference Proceedings).

@inproceedings{d7bf4a3fbf9d40aaa9ffb4b790735157,

title = "Achieving 3D imaging through focus stacking",

abstract = "Newly developed 3D reconstruction technology has many uses ranging from facial recognition, self-driving vehicles, and producing accurate models of samples. To utilize 3D reconstruction, a depth map of the sample must be generated from a series of images. This can be done using stereoscopic 3D, or in the case of a fixed camera (such as the 10ID On-Axis Microscope at NSLS-II used for this paper) through focus stacking. This paper will explain how focus stacking can be used to generate in-focus images at very shallow depth of fields, and merge these images to create depth maps and 3D models.",

author = "J. Wlodek and Gofron, \{K. J.\} and Cai, \{Y. Q.\}",

note = "Publisher Copyright: {\textcopyright} 2019 Author(s).; 13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018 ; Conference date: 11-06-2018 Through 15-06-2018",

year = "2019",

month = jan,

day = "15",

doi = "10.1063/1.5084619",

language = "English",

series = "AIP Conference Proceedings",

publisher = "American Institute of Physics Inc.",

editor = "Shangjr Gwo and Tzu-Hung Chuang and Yao-Chang Lee and Chainani, \{Ashish Atma\} and Yu-Chun Chuang and Chun-Chieh Wang and Di-Jing Huang and Der-Hsin Wei and Gwo-Huei Luo and Jyh-Fu Lee and Hong-Ji Lin and Gung-Chian Ying and Cheng-Maw Cheng and Jhih-Min Lin and Jin-Ming Chen and Ping-Jung Chou and Ching-Shiang Huang and Yaw-Wen Yang and U-Ser Jeng and Chin-Cheng Kuo and Hwo-Shuenn Sheu and Shih-Chun Chung and Wai-Keung Lau and Hsin-Yi Lee and Mau-Tsu Tang",

booktitle = "Proceedings of the 13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018",

}

Wlodek, J, Gofron, KJ & Cai, YQ 2019, Achieving 3D imaging through focus stacking. in S Gwo, T-H Chuang, Y-C Lee, AA Chainani, Y-C Chuang, C-C Wang, D-J Huang, D-H Wei, G-H Luo, J-F Lee, H-J Lin, G-C Ying, C-M Cheng, J-M Lin, J-M Chen, P-J Chou, C-S Huang, Y-W Yang, U-S Jeng, C-C Kuo, H-S Sheu, S-C Chung, W-K Lau, H-Y Lee & M-T Tang (eds), Proceedings of the 13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018., 050001, AIP Conference Proceedings, vol. 2054, American Institute of Physics Inc., 13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018, Taipei, Taiwan, Province of China, 06/11/18. https://doi.org/10.1063/1.5084619

Achieving 3D imaging through focus stacking. / Wlodek, J.; Gofron, K. J.; Cai, Y. Q.
Proceedings of the 13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018. ed. / Shangjr Gwo; Tzu-Hung Chuang; Yao-Chang Lee; Ashish Atma Chainani; Yu-Chun Chuang; Chun-Chieh Wang; Di-Jing Huang; Der-Hsin Wei; Gwo-Huei Luo; Jyh-Fu Lee; Hong-Ji Lin; Gung-Chian Ying; Cheng-Maw Cheng; Jhih-Min Lin; Jin-Ming Chen; Ping-Jung Chou; Ching-Shiang Huang; Yaw-Wen Yang; U-Ser Jeng; Chin-Cheng Kuo; Hwo-Shuenn Sheu; Shih-Chun Chung; Wai-Keung Lau; Hsin-Yi Lee; Mau-Tsu Tang. American Institute of Physics Inc., 2019. 050001 (AIP Conference Proceedings; Vol. 2054).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review

TY - GEN

T1 - Achieving 3D imaging through focus stacking

AU - Wlodek, J.

AU - Gofron, K. J.

AU - Cai, Y. Q.

PY - 2019/1/15

Y1 - 2019/1/15

N2 - Newly developed 3D reconstruction technology has many uses ranging from facial recognition, self-driving vehicles, and producing accurate models of samples. To utilize 3D reconstruction, a depth map of the sample must be generated from a series of images. This can be done using stereoscopic 3D, or in the case of a fixed camera (such as the 10ID On-Axis Microscope at NSLS-II used for this paper) through focus stacking. This paper will explain how focus stacking can be used to generate in-focus images at very shallow depth of fields, and merge these images to create depth maps and 3D models.

AB - Newly developed 3D reconstruction technology has many uses ranging from facial recognition, self-driving vehicles, and producing accurate models of samples. To utilize 3D reconstruction, a depth map of the sample must be generated from a series of images. This can be done using stereoscopic 3D, or in the case of a fixed camera (such as the 10ID On-Axis Microscope at NSLS-II used for this paper) through focus stacking. This paper will explain how focus stacking can be used to generate in-focus images at very shallow depth of fields, and merge these images to create depth maps and 3D models.

UR - https://www.scopus.com/pages/publications/85060474858

U2 - 10.1063/1.5084619

DO - 10.1063/1.5084619

M3 - Conference contribution

AN - SCOPUS:85060474858

T3 - AIP Conference Proceedings

BT - Proceedings of the 13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018

A2 - Gwo, Shangjr

A2 - Chuang, Tzu-Hung

A2 - Lee, Yao-Chang

A2 - Chainani, Ashish Atma

A2 - Chuang, Yu-Chun

A2 - Wang, Chun-Chieh

A2 - Huang, Di-Jing

A2 - Wei, Der-Hsin

A2 - Luo, Gwo-Huei

A2 - Lee, Jyh-Fu

A2 - Lin, Hong-Ji

A2 - Ying, Gung-Chian

A2 - Cheng, Cheng-Maw

A2 - Lin, Jhih-Min

A2 - Chen, Jin-Ming

A2 - Chou, Ping-Jung

A2 - Huang, Ching-Shiang

A2 - Yang, Yaw-Wen

A2 - Jeng, U-Ser

A2 - Kuo, Chin-Cheng

A2 - Sheu, Hwo-Shuenn

A2 - Chung, Shih-Chun

A2 - Lau, Wai-Keung

A2 - Lee, Hsin-Yi

A2 - Tang, Mau-Tsu

PB - American Institute of Physics Inc.

T2 - 13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018

Y2 - 11 June 2018 through 15 June 2018

ER -

Wlodek J, Gofron KJ, Cai YQ. Achieving 3D imaging through focus stacking. In Gwo S, Chuang TH, Lee YC, Chainani AA, Chuang YC, Wang CC, Huang DJ, Wei DH, Luo GH, Lee JF, Lin HJ, Ying GC, Cheng CM, Lin JM, Chen JM, Chou PJ, Huang CS, Yang YW, Jeng US, Kuo CC, Sheu HS, Chung SC, Lau WK, Lee HY, Tang MT, editors, Proceedings of the 13th International Conference on Synchrotron Radiation Instrumentation, SRI 2018. American Institute of Physics Inc. 2019. 050001. (AIP Conference Proceedings). doi: 10.1063/1.5084619

Achieving 3D imaging through focus stacking

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