A Computational Approach for Modeling Neutron Scattering Data from Lipid Bilayers

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Abstract

Biological cell membranes are responsible for a range of structural and dynamical phenomena crucial, which are crucial to a cell’s well-being and its associated functions. Due to the complexity of cell membranes, lipid bilayer systems are often used as biomimetic models. These systems have led to significant insights into vital membrane phenomena such as domain formation, passive permeation, and protein insertion. Experimental observations of membrane structure and dynamics are, however, limited in resolution, both spatial and temporal. Importantly, computer simulations are starting to play a more prominent role in interpreting experimental results, enabling a molecular understanding of lipid membranes. In particular, the synergy between scattering experiments and simulations offers opportunities for new discoveries in membrane physics, as the length and time scales probed by molecular dynamics (MD) simulations parallel those of experiments. Here, we describe a coarse-grained MD simulation approach that mimics neutron scattering data from large unilamellar lipid vesicles over a range of bilayer rigidities. Specifically, we simulate vesicle form factors and membrane thickness fluctuations determined from small angle neutron scattering (SANS) and neutron spin echo (NSE) experiments, respectively. Our simulations accurately reproduce trends from experiments and lay the groundwork for studies of more complex membrane systems.

Original languageEnglish
Pages (from-to)916-925
Number of pages10
JournalJournal of Chemical Theory and Computation
Volume13
Issue number2
DOIs
StatePublished - Feb 14 2017

Funding

This work was conducted at the Center for Nanophase Materials Sciences, which is a DOE Office of Science User Facility. J. K. is supported by DOE’s Scientific User Facilities Division. R. A. acknowledges support from ORNL’s Neutron Sciences Directorate Clifford G. Shull Fellowship. This research used resources of the Oak Ridge Leadership Computing Facility at the Oak Ridge National Laboratory, which is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC05-00OR22725.

FundersFunder number
DOE’s Scientific User Facilities Division
U.S. Department of EnergyDE-AC05-00OR22725
Office of Science
Oak Ridge National Laboratory

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