A Bayesian approach for parameter estimation and prediction using a computationally intensive model

Dave Higdon, Jordan D. McDonnell, Nicolas Schunck, Jason Sarich, Stefan M. Wild

Research output: Contribution to journalArticlepeer-review

41 Scopus citations

Abstract

Bayesian methods have been successful in quantifying uncertainty in physics-based problems in parameter estimation and prediction. In these cases, physical measurements y are modeled as the best fit of a physics-based model , where θ denotes the uncertain, best input setting. Hence the statistical model is of the form where accounts for measurement, and possibly other, error sources. When nonlinearity is present in , the resulting posterior distribution for the unknown parameters in the Bayesian formulation is typically complex and nonstandard, requiring computationally demanding computational approaches such as Markov chain Monte Carlo (MCMC) to produce multivariate draws from the posterior. Although generally applicable, MCMC requires thousands (or even millions) of evaluations of the physics model . This requirement is problematic if the model takes hours or days to evaluate. To overcome this computational bottleneck, we present an approach adapted from Bayesian model calibration. This approach combines output from an ensemble of computational model runs with physical measurements, within a statistical formulation, to carry out inference. A key component of this approach is a statistical response surface, or emulator, estimated from the ensemble of model runs. We demonstrate this approach with a case study in estimating parameters for a density functional theory model, using experimental mass/binding energy measurements from a collection of atomic nuclei. We also demonstrate how this approach produces uncertainties in predictions for recent mass measurements obtained at Argonne National Laboratory.

Original languageEnglish
Article number034009
JournalJournal of Physics G: Nuclear and Particle Physics
Volume42
Issue number3
DOIs
StatePublished - Mar 1 2015
Externally publishedYes

Funding

FundersFunder number
U.S. Department of Energy

    Keywords

    • Bayesian
    • Gaussian process
    • Markov chain Monte Carlo
    • parameter estimation
    • prediction uncertainty

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