Projects per year
Overview
Education/Academic qualification
Eng-Mechanical, Bachelor's Degree
Fingerprint
- 1 Similar Profiles
Researcher collaborations from the last five years
Projects
- 1 Finished
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Complete genome sequence of Luteolibacter sp. strain Populi, a member of phylum Verrucomicrobiota isolated from the Populus trichocarpa rhizosphere
Imai, S., Allen, B., Hochanadel, L. H., Alexander, W. G., Cottingham, R. W., Schadt, C. W., Pelletier, D. A. & Podar, M., Sep 2024, In: Microbiology Resource Announcements. 13, 9Research output: Contribution to journal › Article › peer-review
Open Access -
CORE: Comparable, Open, Reliable, Extensible Software: An Experience Report of Four Flux Balance Analysis Tools
Marsh, A. L., Cohen, M. B. & Cottingham, R. W., Sep 3 2023, ACM-BCB 2023 - 14th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, 66. (ACM-BCB 2023 - 14th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Open Access -
Metagenome-assembled genome extraction and analysis from microbiomes using KBase
Chivian, D., Jungbluth, S. P., Dehal, P. S., Wood-Charlson, E. M., Canon, R. S., Allen, B. H., Clark, M. M., Gu, T., Land, M. L., Price, G. A., Riehl, W. J., Sneddon, M. W., Sutormin, R., Zhang, Q., Cottingham, R. W., Henry, C. S. & Arkin, A. P., Jan 2023, In: Nature Protocols. 18, 1, p. 208-238 31 p.Research output: Contribution to journal › Article › peer-review
Open Access46 Scopus citations -
Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase (Nature Protocols, (2023), 18, 1, (208-238), 10.1038/s41596-022-00747-x)
Chivian, D., Jungbluth, S. P., Dehal, P. S., Wood-Charlson, E. M., Canon, R. S., Allen, B. H., Clark, M. M., Gu, T., Land, M. L., Price, G. A., Riehl, W. J., Sneddon, M. W., Sutormin, R., Zhang, Q., Cottingham, R. W., Henry, C. S. & Arkin, A. P., Feb 2023, In: Nature Protocols. 18, 2, p. 658 1 p.Research output: Contribution to journal › Comment/debate
Open Access -
Erratum: The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Nucleic Acids Research (gkaa746) DOI: 10.1093/nar/gkaa746)
Seaver, S. M. D., Liu, F., Zhang, Q., Jeffryes, J., Faria, J. P., Edirisinghe, J. N., Mundy, M., Chia, N., Noor, E., Beber, M. E., Best, A. A., Dejongh, M., Kimbrel, J. A., D'Haeseleer, P., McCorkle, S. R., Bolton, J. R., Pearson, E., Canon, S., Wood-Charlson, E. M. & Cottingham, R. W. & 2 others, , Jan 8 2021, In: Nucleic Acids Research. 49, D1, p. D1555Research output: Contribution to journal › Comment/debate
Open Access12 Scopus citations
Datasets
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Moab Desert Crust - Sample 4E
Chivian, D. (Creator), Jungbluth, S. P. (Creator), Dehal, P. (Creator), Wood-Charlson, E. M. (Creator), Canon, R. S. (Creator), Allen, B. (Creator), Clark, M. M. (Creator), Gu, T. (Creator), Land, M. L. (Creator), Price, G. A. (Creator), Riehl, W. J. (Creator), Sneddon, M. W. (Creator), Sutormin, R. A. (Creator), Zhang, Q. (Creator), Cottingham Jr, R. (Creator), Henry, C. S. (Creator) & Arkin, A. P. (Creator), DOE Systems Biology Knowledgebase (KBase), Nov 13 2021
DOI: 10.25982/62384.253/1831503
Dataset
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Genome Extraction from Shotgun Metagenome Sequence Data
Chivian, D. (Creator), Jungbluth, S. P. (Creator), Dehal, P. (Creator), Canon, R. S. (Creator), Allen, B. (Creator), Clark, M. M. (Creator), Gu, T. (Creator), Land, M. L. (Creator), Price, G. A. (Creator), Riehl, W. J. (Creator), Sneddon, M. W. (Creator), Sutormin, R. A. (Creator), Zhang, Q. (Creator), Cottingham Jr, R. (Creator), Henry, C. S. (Creator) & Arkin, A. P. (Creator), DOE Systems Biology Knowledgebase (KBase), Nov 9 2021
DOI: 10.25982/33233.606/1831502
Dataset
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KBase Narrative - SOMATA - Motivating Example
Cashman, M. (Creator), Marsh, A. L. (Creator), Cottingham Jr, R. (Creator) & Cohen, M. B. (Creator), DOE Systems Biology Knowledgebase (KBase), Feb 17 2023
DOI: 10.25982/135473.103/1960315
Dataset