Projects per year
Overview
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Eng-Mechanical, Bachelor's Degree
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Dive into the research topics where Robert Cottingham Jr is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Researcher collaborations from the last five years
Based on publications and projects (not datasets). Dive into details by clicking on the dots or
Projects
- 1 Finished
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Complete genome sequence of Luteolibacter sp. strain Populi, a member of phylum Verrucomicrobiota isolated from the Populus trichocarpa rhizosphere
Imai, S., Allen, B., Hochanadel, L. H., Alexander, W. G., Cottingham, R. W., Schadt, C. W., Pelletier, D. A. & Podar, M., Sep 2024, In: Microbiology Resource Announcements. 13, 9Research output: Contribution to journal › Article › peer-review
Open Access -
CORE: Comparable, Open, Reliable, Extensible Software: An Experience Report of Four Flux Balance Analysis Tools
Marsh, A. L., Cohen, M. B. & Cottingham, R. W., Sep 3 2023, ACM-BCB 2023 - 14th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, 66. (ACM-BCB 2023 - 14th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
Open Access -
Metagenome-assembled genome extraction and analysis from microbiomes using KBase
Chivian, D., Jungbluth, S. P., Dehal, P. S., Wood-Charlson, E. M., Canon, R. S., Allen, B. H., Clark, M. M., Gu, T., Land, M. L., Price, G. A., Riehl, W. J., Sneddon, M. W., Sutormin, R., Zhang, Q., Cottingham, R. W., Henry, C. S. & Arkin, A. P., Jan 2023, In: Nature Protocols. 18, 1, p. 208-238 31 p.Research output: Contribution to journal › Article › peer-review
Open Access37 Scopus citations -
Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase (Nature Protocols, (2023), 18, 1, (208-238), 10.1038/s41596-022-00747-x)
Chivian, D., Jungbluth, S. P., Dehal, P. S., Wood-Charlson, E. M., Canon, R. S., Allen, B. H., Clark, M. M., Gu, T., Land, M. L., Price, G. A., Riehl, W. J., Sneddon, M. W., Sutormin, R., Zhang, Q., Cottingham, R. W., Henry, C. S. & Arkin, A. P., Feb 2023, In: Nature Protocols. 18, 2, p. 658 1 p.Research output: Contribution to journal › Comment/debate
Open Access -
Erratum: The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Nucleic Acids Research (gkaa746) DOI: 10.1093/nar/gkaa746)
Seaver, S. M. D., Liu, F., Zhang, Q., Jeffryes, J., Faria, J. P., Edirisinghe, J. N., Mundy, M., Chia, N., Noor, E., Beber, M. E., Best, A. A., Dejongh, M., Kimbrel, J. A., D'Haeseleer, P., McCorkle, S. R., Bolton, J. R., Pearson, E., Canon, S., Wood-Charlson, E. M. & Cottingham, R. W. & 2 others, , Jan 8 2021, In: Nucleic Acids Research. 49, D1, p. D1555Research output: Contribution to journal › Comment/debate
Open Access10 Scopus citations
Datasets
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KBase Narrative - SOMATA - Motivating Example
Cashman, M. (Creator), Marsh, A. L. (Creator), Cottingham Jr, R. (Creator) & Cohen, M. B. (Creator), DOE Systems Biology Knowledgebase (KBase), Feb 17 2023
DOI: 10.25982/135473.103/1960315
Dataset
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Moab Desert Crust - Sample 4E
Chivian, D. (Creator), Jungbluth, S. P. (Creator), Dehal, P. (Creator), Wood-Charlson, E. M. (Creator), Canon, R. S. (Creator), Allen, B. (Creator), Clark, M. M. (Creator), Gu, T. (Creator), Land, M. L. (Creator), Price, G. A. (Creator), Riehl, W. J. (Creator), Sneddon, M. W. (Creator), Sutormin, R. A. (Creator), Zhang, Q. (Creator), Cottingham Jr, R. (Creator), Henry, C. S. (Creator) & Arkin, A. P. (Creator), DOE Systems Biology Knowledgebase (KBase), Nov 13 2021
DOI: 10.25982/62384.253/1831503
Dataset
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Genome Extraction from Shotgun Metagenome Sequence Data
Chivian, D. (Creator), Jungbluth, S. P. (Creator), Dehal, P. (Creator), Canon, R. S. (Creator), Allen, B. (Creator), Clark, M. M. (Creator), Gu, T. (Creator), Land, M. L. (Creator), Price, G. A. (Creator), Riehl, W. J. (Creator), Sneddon, M. W. (Creator), Sutormin, R. A. (Creator), Zhang, Q. (Creator), Cottingham Jr, R. (Creator), Henry, C. S. (Creator) & Arkin, A. P. (Creator), DOE Systems Biology Knowledgebase (KBase), Nov 9 2021
DOI: 10.25982/33233.606/1831502
Dataset