Overview
Education/Academic qualification
Chem-Chemistry, Doctorate Degree
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- 1 Similar Profiles
Projects
- 2 Finished
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High throughput, accurate gene annotation through AI and HPC-enabled structural analysis
Skolnick, J. (PI), Cheng, J. (CoPI), Sedova, A. (CoPI) & Parks, J. (CoPI)
Biological and Environmental Research
09/15/20 → 09/14/23
Project: Research
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Multi-Scale Modeling Framework for Mercury Biogeochemistry
Smith, J. C. (PI), Parks, J. (CoPI) & Tang, G. G. (CoPI)
Biological and Environmental Research
08/15/16 → 08/14/20
Project: Research
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IRIS: A Machine Learning-Based Pose Reranking Tool for RNA-Ligand Docking
Amburn, J. A., J. Rukmani, S., Parks, J. M. & Smith, J. C., Mar 10 2026, In: ACS Omega. 11, 9, p. 15115-15132 18 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Use of Split-Intein Proteins to Design a Small Molecule Biosensor in Plants
Boone, B. A., Maharjan, B., Nguyen, V. C., Parks, J. M., Rush, T. A., Eckert, C. A., Chen, J. G., Abraham, P. E. & Yang, X., Apr 2026, In: Plant Biotechnology Journal. 24, 4, p. 2745-2747 3 p.Research output: Contribution to journal › Article › peer-review
Open Access -
A novel bacterial protein family that catalyses nitrous oxide reduction
He, G., Wang, W., Chen, G., Xie, Y., Parks, J. M., Davin, M. E., Hettich, R. L., Konstantinidis, K. T. & Löffler, F. E., Oct 2 2025, In: Nature. 646, 8083, p. 152-160 9 p.Research output: Contribution to journal › Article › peer-review
6 Scopus citations -
Comparative Analysis of TCR and TCR-pMHC Complex Structure Prediction Tools
Shi, Y., Parks, J. M. & Smith, J. C., Jul 14 2025, In: Journal of Chemical Information and Modeling. 65, 13, p. 7156-7173 18 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Correction for: Factors underlying a latitudinal gradient in the S/G lignin monomer ratio in natural poplar variants (Proceedings of the National Academy of Sciences of the United States of America (2025) 122 (e2503491122) DOI: 10.1073/pnas.2503491122)
Zhu, W., Zhang, J., Prabhakar, P. K., Chan, Y. O., Weber, R. A., Shu, M., Panzade, G., Cooper, C. J., Davidson, R. B., Chen, J. G., Jawdy, S. S., Parks, J. M., Urbanowicz, B. R., Tuskan, G. A., Joshi, T., Dixon, R. A., Muchero, W. & Barros, J., Nov 4 2025, In: Proceedings of the National Academy of Sciences of the United States of America. 122, 44, e2528618122.Research output: Contribution to journal › Comment/debate
Open Access
Datasets
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SARS-CoV2 Docking Dataset
Rogers, D. (Creator), Glaser, J. (Creator), Agarwal, R. (Creator), Vermaas, J. (Creator), Smith, M. D. (Creator), Parks, J. (Creator), Cooper, C. J. (Creator), Sedova, A. (Creator), Boehm, S. (Creator), Baker, M. (Creator) & Smith, J. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), May 27 2021
Dataset
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Proteome-scale Structure Prediction Data - Pseudodesulfovibrio mercurii
Davidson, R. B. (Creator), Coletti, M. (Creator), Gao, M. (Creator), Parks, J. (Creator) & Sedova, A. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), Apr 11 2022
DOI: 10.13139/ORNLNCCS/1861307
Dataset
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Supporting Information for manuscript: “A latitudinal gradient in S/G lignin monomer ratio driven by laccase in natural poplar variants”
Zhu, W. (Creator), Zhang, J. (Creator), Prabhaker, P. (Creator), Yen, O. C. (Creator), Weber, R. (Creator), Panzade, G. (Creator), Cooper, C. (Creator), Davidson, R. (Creator), Parks, J. (Creator), Urbanowicz, B. (Creator), Tuskan, G. (Creator), Joshi, T. (Creator), Dixon, R. (Creator), Muchero, W. (Creator) & Barros, J. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), 2025
DOI: 10.25983/2522827
Dataset