Publications per year
Publications per year
Overview
Education/Academic qualification
Gen-Education, Master's Degree
Fingerprint
Dive into the research topics where Benjamin Allen is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
- 1 Similar Profiles
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Complete genome sequence of Luteolibacter sp. strain Populi, a member of phylum Verrucomicrobiota isolated from the Populus trichocarpa rhizosphere
Imai, S., Allen, B., Hochanadel, L. H., Alexander, W. G., Cottingham, R. W., Schadt, C. W., Pelletier, D. A. & Podar, M., Sep 2024, In: Microbiology Resource Announcements. 13, 9Research output: Contribution to journal › Article › peer-review
Open Access -
Metagenome-assembled genome extraction and analysis from microbiomes using KBase
Chivian, D., Jungbluth, S. P., Dehal, P. S., Wood-Charlson, E. M., Canon, R. S., Allen, B. H., Clark, M. M., Gu, T., Land, M. L., Price, G. A., Riehl, W. J., Sneddon, M. W., Sutormin, R., Zhang, Q., Cottingham, R. W., Henry, C. S. & Arkin, A. P., Jan 2023, In: Nature Protocols. 18, 1, p. 208-238 31 p.Research output: Contribution to journal › Article › peer-review
Open Access74 Scopus citations -
Publisher Correction: Metagenome-assembled genome extraction and analysis from microbiomes using KBase (Nature Protocols, (2023), 18, 1, (208-238), 10.1038/s41596-022-00747-x)
Chivian, D., Jungbluth, S. P., Dehal, P. S., Wood-Charlson, E. M., Canon, R. S., Allen, B. H., Clark, M. M., Gu, T., Land, M. L., Price, G. A., Riehl, W. J., Sneddon, M. W., Sutormin, R., Zhang, Q., Cottingham, R. W., Henry, C. S. & Arkin, A. P., Feb 2023, In: Nature Protocols. 18, 2, p. 658 1 p.Research output: Contribution to journal › Comment/debate
Open Access1 Scopus citations -
Application of the metabolic modeling pipeline in KBase to categorize reactions, predict essential genes, and predict pathways in an isolate genome
Allen, B. H., Gupta, N., Edirisinghe, J. N., Faria, J. P. & Henry, C. S., 2022, Methods in Molecular Biology. Humana Press Inc., p. 291-320 30 p. (Methods in Molecular Biology; vol. 2349).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
9 Scopus citations -
Bioinformatic Teaching Resources – For Educators, by Educators – Using KBase, a Free, User-Friendly, Open Source Platform
Dow, E. G., Wood-Charlson, E. M., Biller, S. J., Paustian, T., Schirmer, A., Sheik, C. S., Whitham, J. M., Krebs, R., Goller, C. C., Allen, B., Crockett, Z. & Arkin, A. P., Oct 29 2021, In: Frontiers in Education. 6, 711535.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations
Datasets
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Genome Extraction from Shotgun Metagenome Sequence Data
Chivian, D. (Creator), Jungbluth, S. P. (Creator), Dehal, P. (Creator), Canon, R. S. (Creator), Allen, B. (Creator), Clark, M. M. (Creator), Gu, T. (Creator), Land, M. L. (Creator), Price, G. A. (Creator), Riehl, W. J. (Creator), Sneddon, M. W. (Creator), Sutormin, R. A. (Creator), Zhang, Q. (Creator), Cottingham Jr, R. (Creator), Henry, C. S. (Creator) & Arkin, A. P. (Creator), DOE Systems Biology Knowledgebase (KBase), Nov 9 2021
DOI: 10.25982/33233.606/1831502
Dataset
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Moab Desert Crust - Sample 4E
Chivian, D. (Creator), Jungbluth, S. P. (Creator), Dehal, P. (Creator), Wood-Charlson, E. M. (Creator), Canon, R. S. (Creator), Allen, B. (Creator), Clark, M. M. (Creator), Gu, T. (Creator), Land, M. L. (Creator), Price, G. A. (Creator), Riehl, W. J. (Creator), Sneddon, M. W. (Creator), Sutormin, R. A. (Creator), Zhang, Q. (Creator), Cottingham Jr, R. (Creator), Henry, C. S. (Creator) & Arkin, A. P. (Creator), DOE Systems Biology Knowledgebase (KBase), Nov 13 2021
DOI: 10.25982/62384.253/1831503
Dataset