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Researcher collaborations from the last five years
Profiles
Projects
- 2 Finished
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High throughput, accurate gene annotation through AI and HPC-enabled structural analysis
Skolnick, J. (PI), Cheng, J. (CoPI), Sedova, A. (CoPI) & Parks, J. (CoPI)
Biological and Environmental Research
09/15/20 → 09/14/23
Project: Research
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Multi-Scale Modeling Framework for Mercury Biogeochemistry
Smith, J. C. (PI), Parks, J. (CoPI) & Tang, G. G. (CoPI)
Biological and Environmental Research
08/15/16 → 08/14/20
Project: Research
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Robustness of Deep Learning Classification to Adversarial Input on GPUs: Asynchronous Parallel Accumulation Is a Source of Vulnerability
Shanmugavelu, S., Taillefumier, M., Culver, C., Ganesh, V., Hernandez, O. & Sedova, A., 2026, Euro-Par 2025: Parallel Processing - 31st European Conference on Parallel and Distributed Processing, Proceedings. Nagel, W. E., Goehringer, D. & Diniz, P. C. (eds.). Springer Science and Business Media Deutschland GmbH, p. 306-320 15 p. (Lecture Notes in Computer Science; vol. 15901 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Use of Split-Intein Proteins to Design a Small Molecule Biosensor in Plants
Boone, B. A., Maharjan, B., Nguyen, V. C., Parks, J. M., Rush, T. A., Eckert, C. A., Chen, J. G., Abraham, P. E. & Yang, X., 2026, (Accepted/In press) In: Plant Biotechnology Journal.Research output: Contribution to journal › Article › peer-review
Open Access -
A novel bacterial protein family that catalyses nitrous oxide reduction
He, G., Wang, W., Chen, G., Xie, Y., Parks, J. M., Davin, M. E., Hettich, R. L., Konstantinidis, K. T. & Löffler, F. E., Oct 2 2025, In: Nature. 646, 8083, p. 152-160 9 p.Research output: Contribution to journal › Article › peer-review
4 Scopus citations
Datasets
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OpenMDlr Dataset
Davidson, R. B. (Creator) & Sedova, A. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), May 12 2022
DOI: 10.13139/ORNLNCCS/1866593
Dataset
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Simulation dataset for "Chemical and Morphological Structure of Transgenic Switchgrass Organosolv Lignin Extracted by Ethanol, Tetrahydrofuran, and γ-Valerolactone Pretreatments"
Mathamangalath Sethuraman, V. (Creator) & Petridis, L. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), Apr 23 2021
DOI: 10.13139/ORNLNCCS/1778905
Dataset
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Supporting Information for manuscript: “A latitudinal gradient in S/G lignin monomer ratio driven by laccase in natural poplar variants”
Zhu, W. (Creator), Zhang, J. (Creator), Prabhaker, P. (Creator), Yen, O. C. (Creator), Weber, R. (Creator), Panzade, G. (Creator), Cooper, C. (Creator), Davidson, R. (Creator), Parks, J. (Creator), Urbanowicz, B. (Creator), Tuskan, G. (Creator), Joshi, T. (Creator), Dixon, R. (Creator), Muchero, W. (Creator) & Barros, J. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), 2025
DOI: 10.25983/2522827
Dataset