Projects per year
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Dive into the research topics where Molecular Biophysics is active. These topic labels come from the works of this organization's members. Together they form a unique fingerprint.
Researcher collaborations from the last five years
Based on publications and projects (not datasets). Dive into details by clicking on the dots or
Profiles
Projects
- 2 Finished
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High throughput, accurate gene annotation through AI and HPC-enabled structural analysis
Skolnick, J. (PI), Cheng, J. (CoPI), Sedova, A. (CoPI) & Parks, J. (CoPI)
Biological and Environmental Research
09/15/20 → 09/14/23
Project: Research
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Multi-Scale Modeling Framework for Mercury Biogeochemistry
Smith, J. C. (PI), Parks, J. (CoPI) & Tang, G. G. (CoPI)
Biological and Environmental Research
08/15/16 → 08/14/20
Project: Research
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Robustness of Deep Learning Classification to Adversarial Input on GPUs: Asynchronous Parallel Accumulation Is a Source of Vulnerability
Shanmugavelu, S., Taillefumier, M., Culver, C., Ganesh, V., Hernandez, O. & Sedova, A., 2026, Euro-Par 2025: Parallel Processing - 31st European Conference on Parallel and Distributed Processing, Proceedings. Nagel, W. E., Goehringer, D. & Diniz, P. C. (eds.). Springer Science and Business Media Deutschland GmbH, p. 306-320 15 p. (Lecture Notes in Computer Science; vol. 15901 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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A novel bacterial protein family that catalyses nitrous oxide reduction
He, G., Wang, W., Chen, G., Xie, Y., Parks, J. M., Davin, M. E., Hettich, R. L., Konstantinidis, K. T. & Löffler, F. E., Oct 2 2025, In: Nature. 646, 8083, p. 152-160 9 p.Research output: Contribution to journal › Article › peer-review
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Coarse-grained molecular dynamics simulation of solvent-dependent cellulose nanofiber interactions
Rukmani, S. J., Yu, Y., Mohan, M., Sethuraman, V., Goswami, M. & Smith, J. C., 2025, (Accepted/In press) In: Biophysical Journal.Research output: Contribution to journal › Article › peer-review
Datasets
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Proteome-scale Structure Prediction Data - Pseudodesulfovibrio mercurii
Davidson, R. B. (Creator), Coletti, M. (Creator), Gao, M. (Creator), Parks, J. (Creator) & Sedova, A. (Creator), Constellation by Oak Ridge Leadership Computing Facility (OLCF), Apr 11 2022
DOI: 10.13139/ORNLNCCS/1861307
Dataset
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Structural Models and Sequence Alignment Results of the Desulfovibrio vulgaris Proteome
Davidson, R. B. (Creator), Coletti, M. (Creator), Gao, M. (Creator) & Sedova, A. (Creator), Constellation by Oak Ridge Leadership Computing Facility (OLCF), Jul 12 2023
DOI: 10.13139/ORNLNCCS/1988139
Dataset
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Supporting Information for manuscript: “A latitudinal gradient in S/G lignin monomer ratio driven by laccase in natural poplar variants”
Zhu, W. (Creator), Zhang, J. (Creator), Prabhaker, P. (Creator), Yen, O. C. (Creator), Weber, R. (Creator), Panzade, G. (Creator), Cooper, C. (Creator), Davidson, R. (Creator), Parks, J. (Creator), Urbanowicz, B. (Creator), Tuskan, G. (Creator), Joshi, T. (Creator), Dixon, R. (Creator), Muchero, W. (Creator) & Barros, J. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), 2025
DOI: 10.25983/2522827
Dataset