Computational and Predictive Biology

Search results

• Kraken2 Metagenomic Virus Database

  Garcia, B. J. (Creator), Simha, R. (Creator), Garvin, M. (Creator), Furches, A. (Creator), Jones, P. C. (Creator), Hyatt, P. D. (Creator), Schadt, C. (Creator), Pelletier, D. (Creator) & Jacobson, D. (Creator), Constellation by Oak Ridge Leadership Computing Facility (OLCF), Apr 23 2020

  DOI: 10.13139/OLCF/1615774

  Dataset

• KBase Narrative - SOMATA - Motivating Example

  Cashman, M. (Creator), Marsh, A. L. (Creator), Cottingham Jr, R. (Creator) & Cohen, M. B. (Creator), DOE Systems Biology Knowledgebase (KBase), Feb 17 2023

  DOI: 10.25982/135473.103/1960315

  Dataset

• 2020 Soil Characterization measurements at Clatskanie and Corvallis, Oregon Populus Trichocarpa GWAS Populations

  Mayes, M. (Creator), Phillips, J. (Creator), Ottinger, S. (Creator), Fortner, A. (Creator), Dove, N. (Creator), Hopp, D. (Creator), Martin, S. (Creator) & Schadt, C. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), Nov 14 2023

  DOI: 10.25983/2205588

  Dataset

• Evaluating the Performance of Random Forest and Iterative Random Forest Based Methods when Applied to Gene Expression Data

  Walker, A. M. (Creator), Cliff, A. (Creator), Romero, J. (Creator), Shah, M. B. (Creator), Jones, P. C. (Creator), Gazolla, J. G. F. M. (Creator), Jacobson, D. (Creator) & Kainer, D. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), Jun 9 2022

  DOI: 10.25983/1871691

  Dataset

• Supporting data for climatic clustering and longitudinal analysis with impacts on food, bioenergy, and pandemics

  Lagergren, J. (Creator), Cashman, M. (Creator), Melesse Vergara, V. (Creator), Eller, P. R. (Creator), Felipe Machado Gazolla, J. G. (Creator), Chhetri, H. (Creator), Streich, J. (Creator), Climer, S. (Creator), Thornton, P. (Creator), Joubert, W. (Creator) & Jacobson, D. (Creator), Constellation by Oak Ridge Leadership Computing Facility (OLCF), Nov 18 2021

  DOI: 10.13139/ORNLNCCS/1828678

  Dataset

• Genome Extraction from Shotgun Metagenome Sequence Data

  Chivian, D. (Creator), Jungbluth, S. P. (Creator), Dehal, P. (Creator), Canon, R. S. (Creator), Allen, B. (Creator), Clark, M. M. (Creator), Gu, T. (Creator), Land, M. L. (Creator), Price, G. A. (Creator), Riehl, W. J. (Creator), Sneddon, M. W. (Creator), Sutormin, R. A. (Creator), Zhang, Q. (Creator), Cottingham Jr, R. (Creator), Henry, C. S. (Creator) & Arkin, A. P. (Creator), DOE Systems Biology Knowledgebase (KBase), Nov 9 2021

  DOI: 10.25982/33233.606/1831502

  Dataset

• Supporting information for "Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa"

  Lagergren, J. (Creator), Pavicic Venegas, M. (Creator), Chhetri, H. (Creator), York, L. (Creator), Hyatt, D. (Creator), Kainer, D. (Creator), Rutter, E. M. (Creator), Flores, K. (Creator), Taylor, G. (Creator), Jacobson, D. (Creator) & Streich, J. (Creator), Constellation by Oak Ridge Leadership Computing Facility (OLCF), Jan 26 2023

  DOI: 10.13139/ORNLNCCS/1908723

  Dataset

• Moab Desert Crust - Sample 4E

  Chivian, D. (Creator), Jungbluth, S. P. (Creator), Dehal, P. (Creator), Wood-Charlson, E. M. (Creator), Canon, R. S. (Creator), Allen, B. (Creator), Clark, M. M. (Creator), Gu, T. (Creator), Land, M. L. (Creator), Price, G. A. (Creator), Riehl, W. J. (Creator), Sneddon, M. W. (Creator), Sutormin, R. A. (Creator), Zhang, Q. (Creator), Cottingham Jr, R. (Creator), Henry, C. S. (Creator) & Arkin, A. P. (Creator), DOE Systems Biology Knowledgebase (KBase), Nov 13 2021

  DOI: 10.25982/62384.253/1831503

  Dataset

• KCS supergene fasta files, PDB files, and presence absence matrix for genotypes referenced in (pub DOI)

  Garvin, M. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), Mar 20 2024

  DOI: 10.25983/2322563

  Dataset