Projects per year
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Dive into the research topics where Computational and Predictive Biology is active. These topic labels come from the works of this organization's members. Together they form a unique fingerprint.
Researcher collaborations from the last five years
Based on publications and projects (not datasets). Dive into details by clicking on the dots or
Profiles
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Chanaka Abeyratne
- Computational and Predictive Biology - Postdoctoral Research Associate - Comput
Person
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Fibroblast dysregulation promotes dermal eosinophilic/Th2 inflammation
Graves, D. D. T. (PI), Jacobson, D. (CoPI), Seykora, J. T. (CoPI) & Ko, K. I. (CoPI)
National Institute of Arthritis and Musculoskeletal and Skin Diseases
09/21/23 → 08/31/26
Project: Research
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Integrative Omics Center for Accelerating Neurobiological Understanding of Opioid Addiction (ICAN)
Johnson, E. E. O. (PI), Jacobson, D. (CoPI), Scacheri, P. P. C. (CoPI) & Troiani, V. V. (CoPI)
09/15/22 → 05/31/26
Project: Research
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Multi-omics Gene Network Identification (Project 4)
Jacobson, D. (PI)
National Institute on Drug Abuse
09/1/22 → 05/31/26
Project: Research
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A Tale from the Trenches: Applying Metamorphic and Differential Testing to Bioinformatics Software
Marsh, A., Cohen, M. B. & Cottingham, R. W., 2025, 2025 IEEE Conference on Software Testing, Verification and Validation, ICST 2025. Fasolino, A. R., Panichella, S., Aleti, A. & Mesbah, A. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 553-564 12 p. (2025 IEEE Conference on Software Testing, Verification and Validation, ICST 2025).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Climate adaptation in Populus trichocarpa: key adaptive loci identified for stomata and leaf traits
Klein, M. C., Meng, Z., Bailey-Bale, J., Milner, S., Shi, P., Muchero, W., Chen, J. G., Tschaplinski, T. J., Jacobson, D., Lagergren, J., Lane, M., O'Brien, C., Chhetri, H., Abeyratne, C. R., Shu, M., Freer-Smith, P., Buckley, T. N., Magney, T. S., Monroe, J. G. & Tuskan, G. A. & 1 others, , Sep 2025, In: New Phytologist. 247, 6, p. 2647-2664 18 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Correction: Drought adaptation index (DAI) based on BLUP as a selection approach for drought-resilient switchgrass germplasm (Frontiers in Genetics, (2025), 16, (1626083), 10.3389/fgene.2025.1626083)
Makaju, S. O., Chhetri, H. B., Abeyratne, C. R., Pavicic, M., Poudel, H., Irfan, J. A., Giabardo, A., Devos, K. M., Jacobson, D. & Missaoui, A. M., 2025, In: Frontiers in Genetics. 16, 1731825.Research output: Contribution to journal › Comment/debate
Open Access
Datasets
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Evaluating the Performance of Random Forest and Iterative Random Forest Based Methods when Applied to Gene Expression Data
Walker, A. M. (Creator), Cliff, A. (Creator), Romero, J. (Creator), Shah, M. B. (Creator), Jones, P. C. (Creator), Gazolla, J. G. F. M. (Creator), Jacobson, D. (Creator) & Kainer, D. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), Jun 9 2022
DOI: 10.25983/1871691
Dataset
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KCS supergene fasta files, PDB files, and presence absence matrix for genotypes referenced in (pub DOI)
Garvin, M. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), Mar 20 2024
DOI: 10.25983/2322563
Dataset
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Kraken2 Metagenomic Virus Database
Garcia, B. J. (Creator), Simha, R. (Creator), Garvin, M. (Creator), Furches, A. (Creator), Jones, P. C. (Creator), Hyatt, P. D. (Creator), Schadt, C. (Creator), Pelletier, D. (Creator) & Jacobson, D. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). Oak Ridge Leadership Computing Facility (OLCF); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), Apr 23 2020
Dataset