Projects per year
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Dive into the research topics where Computational and Predictive Biology is active. These topic labels come from the works of this organization's members. Together they form a unique fingerprint.
Researcher collaborations from the last five years
Based on publications and projects (not datasets). Dive into details by clicking on the dots or
Profiles
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Chanaka Abeyratne
- Computational and Predictive Biology - Postdoctoral Research Associate - Comput
Person
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Fibroblast dysregulation promotes dermal eosinophilic/Th2 inflammation
Graves, D. D. T. (PI), Jacobson, D. (CoPI), Seykora, J. T. (CoPI) & Ko, K. I. (CoPI)
National Institute of Arthritis and Musculoskeletal and Skin Diseases
09/21/23 → 08/31/25
Project: Research
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Integrative Omics Center for Accelerating Neurobiological Understanding of Opioid Addiction (ICAN)
Johnson, E. E. O. (PI), Jacobson, D. (CoPI), Scacheri, P. P. C. (CoPI) & Troiani, V. V. (CoPI)
09/15/22 → 05/31/26
Project: Research
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Multi-omics Gene Network Identification (Project 4)
Jacobson, D. (PI)
National Institute on Drug Abuse
06/1/23 → 05/31/25
Project: Research
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A Tale from the Trenches: Applying Metamorphic and Differential Testing to Bioinformatics Software
Marsh, A., Cohen, M. B. & Cottingham, R. W., 2025, 2025 IEEE Conference on Software Testing, Verification and Validation, ICST 2025. Fasolino, A. R., Panichella, S., Aleti, A. & Mesbah, A. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 553-564 12 p. (2025 IEEE Conference on Software Testing, Verification and Validation, ICST 2025).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Multiomic Network Analysis Identifies Dysregulated Neurobiological Pathways in Opioid Addiction
VA Million Veteran Program, Jul 1 2025, In: Biological Psychiatry. 98, 1, p. 11-22 12 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Natural variation in growth and yield to waterlogging across climate-diverse pennycress accessions
Combs-Giroir, R., Lagergren, J., Jacobson, D. A. & Gschwend, A. R., 2025, In: Journal of Plant Interactions. 20, 1, 2455414.Research output: Contribution to journal › Article › peer-review
Open Access
Datasets
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KCS supergene fasta files, PDB files, and presence absence matrix for genotypes referenced in (pub DOI)
Garvin, M. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), Mar 20 2024
DOI: 10.25983/2322563
Dataset
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Kraken2 Metagenomic Virus Database
Garcia, B. J. (Creator), Simha, R. (Creator), Garvin, M. (Creator), Furches, A. (Creator), Jones, P. C. (Creator), Hyatt, P. D. (Creator), Schadt, C. (Creator), Pelletier, D. (Creator) & Jacobson, D. (Creator), Constellation by Oak Ridge Leadership Computing Facility (OLCF), Apr 23 2020
Dataset
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Genome Extraction from Shotgun Metagenome Sequence Data
Chivian, D. (Creator), Jungbluth, S. P. (Creator), Dehal, P. (Creator), Canon, R. S. (Creator), Allen, B. (Creator), Clark, M. M. (Creator), Gu, T. (Creator), Land, M. L. (Creator), Price, G. A. (Creator), Riehl, W. J. (Creator), Sneddon, M. W. (Creator), Sutormin, R. A. (Creator), Zhang, Q. (Creator), Cottingham Jr, R. (Creator), Henry, C. S. (Creator) & Arkin, A. P. (Creator), DOE Systems Biology Knowledgebase (KBase), Nov 9 2021
DOI: 10.25982/33233.606/1831502
Dataset