Projects per year
Fingerprint
Researcher collaborations from the last five years
Profiles
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Chanaka Abeyratne
- Computational and Predictive Biology - Postdoctoral Research Associate - Comput
Person
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Fibroblast dysregulation promotes dermal eosinophilic/Th2 inflammation
Graves, D. D. T. (PI), Jacobson, D. (CoPI), Seykora, J. T. (CoPI) & Ko, K. I. (CoPI)
National Institute of Arthritis and Musculoskeletal and Skin Diseases
09/21/23 → 08/31/26
Project: Research
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Integrative Omics Center for Accelerating Neurobiological Understanding of Opioid Addiction (ICAN)
Johnson, E. E. O. (PI), Jacobson, D. (CoPI), Scacheri, P. P. C. (CoPI) & Troiani, V. V. (CoPI)
09/15/22 → 05/31/26
Project: Research
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Multi-omics Gene Network Identification (Project 4)
Jacobson, D. (PI)
National Institute on Drug Abuse
09/1/22 → 05/31/26
Project: Research
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Optimization of Fiber Amplifier Design for Stimulated Raman Scattering Microscopy
Allen, C. H., Othman, A. M., Gagnon, J. R., Buragina, T., Kotb, H. & Murugkar, S., 2026, In: IEEE Journal of Selected Topics in Quantum Electronics. 32, 4, 7100110.Research output: Contribution to journal › Article › peer-review
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Robustness of Deep Learning Classification to Adversarial Input on GPUs: Asynchronous Parallel Accumulation Is a Source of Vulnerability
Shanmugavelu, S., Taillefumier, M., Culver, C., Ganesh, V., Hernandez, O. & Sedova, A., 2026, Euro-Par 2025: Parallel Processing - 31st European Conference on Parallel and Distributed Processing, Proceedings. Nagel, W. E., Goehringer, D. & Diniz, P. C. (eds.). Springer Science and Business Media Deutschland GmbH, p. 306-320 15 p. (Lecture Notes in Computer Science; vol. 15901 LNCS).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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Active motility and chemotactic movement regulate the microbial early-colonization and biodiversity
Wang, Y., Ebrahimi, A., Chen, G., Zhang, Z., Zhu, K., Franklin, S., Jin, Y., Liu, Y. & Wang, G., Aug 2025, In: Geoderma. 460, 117419.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations
Prizes
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2018 R&D 100 Award for The TNT Cloning System
Tuskan, G. (Recipient), Yang, X. (Recipient) & De Paoli, H. C. (Recipient), 2018
Prize: Honorary award
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2024 R&D 100 Award for Split-Marker for Gene Stacking
Yang, X. (Recipient), Yuan, G. (Recipient), Tuskan, G. (Recipient), Hassan, M. M. (Recipient) & Lu, H. (Recipient), 2024
Prize: Honorary award
Datasets
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KCS supergene fasta files, PDB files, and presence absence matrix for genotypes referenced in (pub DOI)
Garvin, M. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), Mar 20 2024
DOI: 10.25983/2322563
Dataset
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KBase Narrative - Formation of a constructed microbial community in a nutrient rich environment indicates bacterial interspecific competition
Wang, J. (Creator), Appidi, M. R. (Creator), Burdick, L. (Creator), Abraham, P. (Creator), Hettich, R. {. (Creator), Pelletier, D. (Creator) & Doktycz, M. (Creator), DOE Systems Biology Knowledgebase (KBase), Mar 17 2024
DOI: 10.25982/174276.9/2324582
Dataset
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Evaluating the Performance of Random Forest and Iterative Random Forest Based Methods when Applied to Gene Expression Data
Walker, A. M. (Creator), Cliff, A. (Creator), Romero, J. (Creator), Shah, M. B. (Creator), Jones, P. C. (Creator), Gazolla, J. G. F. M. (Creator), Jacobson, D. (Creator) & Kainer, D. (Creator), Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States), Jun 9 2022
DOI: 10.25983/1871691
Dataset