Publications per year
Publications per year
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2025
Effect of alkali treatment and fungal degradation on the nanostructure and cellulose arrangement in Scots pine cell walls – A neutron and X-ray scattering study
Broda, M., Plaza, N. Z., Jakes, J. E., Baez, C., Pingali, S. V. & Bras, W., Jan 1 2025, In: Carbohydrate Polymers. 347, 122733.Research output: Contribution to journal › Article › peer-review
Open Access -
2024
A science-driven approach to optimize the design for a biological small-angle neutron scattering instrument
Wildgruber, C. U., Qian, S., Chen, S. H., Herwig, K. W., Urban, V. S. & O'Neill, H., Jun 1 2024, In: Journal of Applied Crystallography. 57, Pt 3, p. 818-830 13 p.Research output: Contribution to journal › Article › peer-review
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Biomolecular condensates form spatially inhomogeneous network fluids
Dar, F., Cohen, S. R., Mitrea, D. M., Phillips, A. H., Nagy, G., Leite, W. C., Stanley, C. B., Choi, J. M., Kriwacki, R. W. & Pappu, R. V., Dec 2024, In: Nature Communications. 15, 1, 3413.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Decoupling of the onset of anharmonicity between a protein and its surface water around 200 K
Zheng, L., Zhou, B., Wu, B., Tan, Y., Huang, J., Tyagi, M., Sakai, V. G., Yamada, T., O'neill, H., Zhang, Q. & Hong, L., 2024, In: eLife. 13, RP95665.Research output: Contribution to journal › Article › peer-review
Open Access -
Dynamic entity formed by protein and its hydration water
Ye, Y., Chen, X., Huang, J., Zheng, L., Tang, Q., Long, L., Yamada, T., Tyagi, M., Sakai, V. G., O'Neill, H., Zhang, Q., De Souza, N. R., Xiao, X., Zhao, W., Hong, L. & Liu, Z., Jul 2024, In: Physical Review Research. 6, 3, 033316.Research output: Contribution to journal › Article › peer-review
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Ectopic Production of 3,4-Dihydroxybenzoate in Planta Affects Cellulose Structure and Organization
Senanayake, M., Lin, C. Y., Mansfield, S. D., Eudes, A., Davison, B. H., Pingali, S. V. & O’Neill, H., Jun 10 2024, In: Biomacromolecules. 25, 6, p. 3542-3553 12 p.Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
Effect of equilibration time on the structural gradient in the vertical direction for bicontinuous microemulsions in Winsor-III and -IV systems
Hayes, D. G., Barth, B. A. & Pingali, S. V., 2024, (Accepted/In press) In: Soft Matter.Research output: Contribution to journal › Article › peer-review
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Extended conformations of bifurcating electron transfer flavoprotein constitute up to half the population, possibly mediating conformational change
Khan, S. A., Hicks, A., Leite, W. C., Byrnes, J., Gorai, B., Mroginski, M. A., O'Neill, H. & Miller, A. F., 2024, (Accepted/In press) In: Chemical Science.Research output: Contribution to journal › Article › peer-review
Open Access -
Morphological Characterization of Self-Amplifying mRNA Lipid Nanoparticles
Thelen, J. L., Leite, W., Urban, V. S., O’Neill, H. M., Grishaev, A. V., Curtis, J. E., Krueger, S. & Castellanos, M. M., Jan 16 2024, In: ACS Nano. 18, 2, p. 1464-1476 13 p.Research output: Contribution to journal › Article › peer-review
9 Scopus citations -
p14ARF forms meso-scale assemblies upon phase separation with NPM1
Gibbs, E., Miao, Q., Ferrolino, M., Bajpai, R., Hassan, A., Phillips, A. H., Pitre, A., Kümmerle, R., Miller, S., Nagy, G., Leite, W., Heller, W., Stanley, C., Perrone, B. & Kriwacki, R., Nov 11 2024, In: Nature Communications. 15, 1, p. 9531 1 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Revealing the atomic and electronic mechanism of human manganese superoxide dismutase product inhibition
Azadmanesh, J., Slobodnik, K., Struble, L. R., Lutz, W. E., Coates, L., Weiss, K. L., Myles, D. A. A., Kroll, T. & Borgstahl, G. E. O., Dec 2024, In: Nature Communications. 15, 1, 5973.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
SANS reveals lipid-dependent oligomerization of an intramembrane aspartyl protease from H. volcanii
Thomas, G. M., Wu, Y., Leite, W., Pingali, S. V., Weiss, K. L., Grant, A. J., Diggs, M. W., Schmidt-Krey, I., Gutishvili, G., Gumbart, J. C., Urban, V. S. & Lieberman, R. L., Jul 2 2024, In: Biophysical Journal. 123, 13, p. 1846-1856 11 p.Research output: Contribution to journal › Article › peer-review
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Simple Scattering: Lipid nanoparticle structural data repository
Kim, L. J., Shin, D., Leite, W. C., O’Neill, H., Ruebel, O., Tritt, A. & Hura, G. L., 2024, In: Frontiers in Molecular Biosciences. 11, 1321364.Research output: Contribution to journal › Article › peer-review
Open Access -
Structural Evolution of Lignin Using In Situ Small-Angle Neutron Scattering during Catalytic Disassembly
Zhang, J., Yang, Z., Ponukumati, A., Senanayake, M., Pingali, S. V. & Foston, M., Feb 12 2024, In: ACS Sustainable Chemistry and Engineering. 12, 6, p. 2241-2251 11 p.Research output: Contribution to journal › Article › peer-review
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2023
Amphiphilic Co-Solvents Modulate the Structure of Membrane Domains
Tan, L., Scott, H. L., Smith, M. D., Pingali, S. V., O’Neill, H. M., Morrell-Falvey, J. L., Katsaras, J., Smith, J. C., Davison, B. H., Elkins, J. G. & Nickels, J. D., Jan 30 2023, In: ACS Sustainable Chemistry and Engineering. 11, 4, p. 1598-1609 12 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Assessment of antimicrobial activity of melittin encapsulated in bicontinuous microemulsions prepared using renewable oils
Oehler, M. A., Hayes, D. G., D'Souza, D. H., Senanayake, M., Gurumoorthy, V., Pingali, S. V., O'Neill, H. M., Bras, W. & Urban, V. S., May 2023, In: Journal of Surfactants and Detergents. 26, 3, p. 387-399 13 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Assessment of cryogenic pretreatment for simulating environmental weathering in the formation of surrogate micro- and nanoplastics from agricultural mulch film
Astner, A. F., Hayes, D. G., O'Neill, H., Evans, B. R., Pingali, S. V., Urban, V. S., Schaeffer, S. M. & Young, T. M., Apr 20 2023, In: Science of the Total Environment. 870, 161867.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Atomic Level Interactions and Suprastructural Configuration of Plant Cell Wall Polymers in Dialkylimidazolium Ionic Liquids
Labbé, N., Annamraju, A., Rajan, K., Zuo, X., Long, B. K., Pingali, S. V. & Elder, T. J., May 8 2023, In: Biomacromolecules. 24, 5, p. 2164-2172 9 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Bimodal Rates for Cavitation-Induced Chain Exchange Between Micelles
Larison, T., Williams, E., Collins, C. S., Pingali, S. V. & Stefik, M., Oct 10 2023, In: Macromolecules. 56, 19, p. 7818-7826 9 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Deconvoluting Structures of Component Plant Biopolymers Using Deuterium Labeled Brassica oleracea Stems
Yang, Z., Bhagia, S., O’Neill, H., Evans, B. R., Ragauskas, A. J., Davison, B. H. & Pingali, S. V., Dec 11 2023, In: ACS Sustainable Chemistry and Engineering. 11, 49, p. 17238-17248 11 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Disordered Domain Shifts the Conformational Ensemble of the Folded Regulatory Domain of the Multidomain Oncoprotein c-Src
Gurumoorthy, V., Shrestha, U. R., Zhang, Q., Pingali, S. V., Boder, E. T., Urban, V. S., Smith, J. C., Petridis, L. & O’Neill, H., Feb 13 2023, In: Biomacromolecules. 24, 2, p. 714-723 10 p.Research output: Contribution to journal › Article › peer-review
4 Scopus citations -
Domain crossover in the reductase subunit of NADPH-dependent assimilatory sulfite reductase
Walia, N., Murray, D. T., Garg, Y., He, H., Weiss, K. L., Nagy, G. & Elizabeth Stroupe, M., Dec 2023, In: Journal of Structural Biology. 215, 4, 108028.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Evidence for Lignin-Carbohydrate Complexes from Studies of Transgenic Switchgrass and a Model Lignin-Pectin Composite
Shah, R. S., Senanayake, M., Zhang, H. H., Pu, Y., Biswal, A. K., Pingali, S. V., Davison, B. & O’Neill, H., Nov 6 2023, In: ACS Sustainable Chemistry and Engineering. 11, 44, p. 15941-15950 10 p.Research output: Contribution to journal › Article › peer-review
5 Scopus citations -
Hydrogen-Deuterium Exchange Dynamics of NISTmAb Measured by Small Angle Neutron Scattering
Donnelly, R. B., Pingali, S. V., Heroux, L., Brinson, R. G., Wagner, N. J. & Liu, Y., Dec 4 2023, In: Molecular Pharmaceutics. 20, 12, p. 6358-6367 10 p.Research output: Contribution to journal › Article › peer-review
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New approach for SANS measurement of micelle chain mixing during size and morphology transitions
Larison, T., Pingali, S. V. & Stefik, M., 2023, (Accepted/In press) In: Soft Matter.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Perfect Crystals: microgravity capillary counterdiffusion crystallization of human manganese superoxide dismutase for neutron crystallography
Lutz, W. E., Azadmanesh, J., Lovelace, J. J., Kolar, C., Coates, L., Weiss, K. L. & Borgstahl, G. E. O., Dec 2023, In: npj Microgravity. 9, 1, 39.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
pH-Dependent Solution Micellar Structure of Amphoteric Polypeptoid Block Copolymers with Positionally Controlled Ionizable Sites
Zhang, M., Liu, Y., Zuo, X., Qian, S., Pingali, S. V., Gillilan, R. E., Huang, Q. & Zhang, D., Aug 14 2023, In: Biomacromolecules. 24, 8, p. 3700-3715 16 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Potent and selective covalent inhibition of the papain-like protease from SARS-CoV-2
Sanders, B. C., Pokhrel, S., Labbe, A. D., Mathews, I. I., Cooper, C. J., Davidson, R. B., Phillips, G., Weiss, K. L., Zhang, Q., O’Neill, H., Kaur, M., Schmidt, J. G., Reichard, W., Surendranathan, S., Parvathareddy, J., Phillips, L., Rainville, C., Sterner, D. E., Kumaran, D. & Andi, B. & 13 others, , Dec 2023, In: Nature Communications. 14, 1, 1733.Research output: Contribution to journal › Article › peer-review
Open Access34 Scopus citations -
Revealing protonation states and tracking substrate in serine hydroxymethyltransferase with room-temperature X-ray and neutron crystallography
Drago, V. N., Campos, C., Hooper, M., Collins, A., Gerlits, O., Weiss, K. L., Blakeley, M. P., Phillips, R. S. & Kovalevsky, A., Dec 2023, In: Communications Chemistry. 6, 1, 162.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
SCOMAP-XD: atomistic deuterium contrast matching for small-angle neutron scattering in biology
Hicks, A., Abraham, P., Leite, W., Zhang, Q., Weiss, K. L., Neill, H. O., Petridis, L. & Smith, J. C., Apr 24 2023, In: Acta Crystallographica Section D: Structural Biology. 79, Pt 5, p. 420-434 15 p.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Structural characterization of an intrinsically disordered protein complex using integrated small-angle neutron scattering and computing
Chen, S. H., Weiss, K. L., Stanley, C. & Bhowmik, D., Oct 2023, In: Protein Science. 32, 10, e4772.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Water Content in Nanoparticles Determined by Small-Angle Neutron Scattering and Light Scattering
Kangarlou, B., Hoy, D., Scott, H. L., Pingali, S. V., Khalil, N., Chung, B., Katsaras, J. & Nieh, M. P., Jan 10 2023, In: Langmuir. 39, 1, p. 227-235 9 p.Research output: Contribution to journal › Article › peer-review
4 Scopus citations -
2022
An N⋯H⋯N low-barrier hydrogen bond preorganizes the catalytic site of aspartate aminotransferase to facilitate the second half-reaction
Drago, V. N., Dajnowicz, S., Parks, J. M., Blakeley, M. P., Keen, D. A., Coquelle, N., Weiss, K. L., Gerlits, O., Kovalevsky, A. & Mueser, T. C., Aug 17 2022, In: Chemical Science. 13, 34, p. 10057-10065 9 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Change in Morphology of Dimyristoylphosphatidylcholine/Bile Salt Derivative Bicelle Assemblies with Dodecylmaltoside in the Disk and Ribbon Phases
Leite, W. C., Wu, Y., Pingali, S. V., Lieberman, R. L. & Urban, V. S., Oct 27 2022, In: Journal of Physical Chemistry Letters. 13, 42, p. 9834-9840 7 p.Research output: Contribution to journal › Article › peer-review
6 Scopus citations -
Chemical and Morphological Structure of Transgenic Switchgrass Organosolv Lignin Extracted by Ethanol, Tetrahydrofuran, and γ-Valerolactone Pretreatments
Liang, L., Wang, Y. Y., Bhagia, S., Sethuraman, V., Yang, Z., Meng, X., Bryant, N., Petridis, L., Smith, J. C., Pingali, S. V., Gallego, N. C., Pu, Y., Evans, B. R., O'neill, H. M., Davison, B. H. & Ragauskas, A. J., Jul 18 2022, In: ACS Sustainable Chemistry and Engineering. 10, 28, p. 9041-9052 12 p.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Complementarity of neutron, XFEL and synchrotron crystallography for defining the structures of metalloenzymes at room temperature
Moreno-Chicano, T., Carey, L. M., Axford, D., Beale, J. H., Doak, R. B., Duyvesteyn, H. M. E., Ebrahim, A., Henning, R. W., Monteiro, D. C. F., Myles, D. A., Owada, S., Sherrell, D. A., Straw, M. L., Šrajer, V., Sugimoto, H., Tono, K., Tosha, T., Tews, I., Trebbin, M. & Strange, R. W. & 6 others, , Sep 1 2022, In: IUCrJ. 9, Pt 5, p. 610-624 15 p.Research output: Contribution to journal › Article › peer-review
Open Access11 Scopus citations -
Covalent narlaprevir- and boceprevir-derived hybrid inhibitors of SARS-CoV-2 main protease
Kneller, D. W., Li, H., Phillips, G., Weiss, K. L., Zhang, Q., Arnould, M. A., Jonsson, C. B., Surendranathan, S., Parvathareddy, J., Blakeley, M. P., Coates, L., Louis, J. M., Bonnesen, P. V. & Kovalevsky, A., Dec 2022, In: Nature Communications. 13, 1, 2268.Research output: Contribution to journal › Article › peer-review
Open Access77 Scopus citations -
Cryotrapping peroxide in the active site of human mitochondrial manganese superoxide dismutase crystals for neutron diffraction
Azadmanesh, J., Lutz, W. E., Coates, L., Weiss, K. L. & Borgstahl, G. E. O., Jan 1 2022, In: Acta Crystallographica Section F:Structural Biology Communications. 78, p. 8-16 9 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
drtsans: The data reduction toolkit for small-angle neutron scattering at Oak Ridge National Laboratory
Heller, W. T., Hetrick, J., Bilheux, J., Calvo, J. M. B., Chen, W. R., DeBeer-Schmitt, L., Do, C., Doucet, M., Fitzsimmons, M. R., Godoy, W. F., Granroth, G. E., Hahn, S., He, L., Islam, F., Lin, J., Littrell, K. C., McDonnell, M., McGaha, J., Peterson, P. F. & Pingali, S. V. & 13 others, , Jul 2022, In: SoftwareX. 19, 101101.Research output: Contribution to journal › Article › peer-review
Open Access36 Scopus citations -
Engineered zinc oxide-based nanotherapeutics boost systemic antibacterial efficacy against phloem-restricted diseases
Soliman, M., Lee, B., Ozcan, A., Rawal, T. B., Young, M., Mendis, H. C., Rajasekaran, P., Washington, T., Pingali, S. V., O'Neill, H., Gesquiere, A., De La Fuente, L., Petridis, L., Johnson, E., Graham, J., Santra, S. & Tetard, L., Jul 7 2022, In: Environmental Science: Nano. 9, 8, p. 2869-2886 18 p.Research output: Contribution to journal › Article › peer-review
10 Scopus citations -
Enhancing Lignin Dispersion and Bioconversion by Eliminating Thermal Sterilization
Zhao, Z. M., Meng, X., Senanayake, M., Pingali, S. V., Pu, Y., Li, M., Ma, L., Xu, J. & Ragauskas, A. J., Mar 14 2022, In: ACS Sustainable Chemistry and Engineering. 10, 10, p. 3245-3254 10 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Evidence for Plant-Conserved Region Mediated Trimeric CESAs in Plant Cellulose Synthase Complexes
Du, J., Vandavasi, V. G., Molloy, K. R., Yang, H., Massenburg, L. N., Singh, A., Kwansa, A. L., Yingling, Y. G., O'Neill, H., Chait, B. T., Kumar, M. & Nixon, B. T., Sep 12 2022, In: Biomacromolecules. 23, 9, p. 3663-3677 15 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Experimental mapping of short-wavelength phonons in proteins
Shrestha, U. R., Mamontov, E., O'Neill, H. M., Zhang, Q., Kolesnikov, A. I. & Chu, X., Jan 25 2022, In: Innovation. 3, 1, 100199.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Forming Micro-and Nano-Plastics from Agricultural Plastic Films for Employment in Fundamental Research Studies
Astner, A. F., Hayes, D. G., O'neill, H. M., Evans, B. R., Pingali, S. V., Urban, V. S. & Young, T. M., Jul 2022, In: Journal of Visualized Experiments. 2022, 185, e64112.Research output: Contribution to journal › Article › peer-review
4 Scopus citations -
Modeling the partitioning of amphiphilic molecules and co-solvents in biomembranes
Tan, L., Smith, M. D., Scott, H. L., Yahya, A., Elkins, J. G., Katsaras, J., O'neill, H. M., Pingali, S. V., Smith, J. C., Davison, B. H., Nickels, J. D. & Mcintyre, G. J., Oct 14 2022, In: Journal of Applied Crystallography. 55, p. 1401-1412 12 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Nanostructural Changes Correlated to Decay Resistance of Chemically Modified Wood Fibers
Plaza, N. Z., Pingali, S. V. & Ibach, R. E., May 2022, In: Fibers. 10, 5, 40.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Neutron scattering maps the higher-order assembly of NADPH-dependent assimilatory sulfite reductase
Murray, D. T., Walia, N., Weiss, K. L., Stanley, C. B., Randolph, P. S., Nagy, G. & Stroupe, M. E., May 17 2022, In: Biophysical Journal. 121, 10, p. 1799-1812 14 p.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Small angle neutron scattering and lipidomic analysis of a native, trimeric PSI-SMALP from a thermophilic cyanobacteria
Brady, N. G., Qian, S., Nguyen, J., O'Neill, H. M. & Bruce, B. D., Oct 1 2022, In: Biochimica et Biophysica Acta - Bioenergetics. 1863, 7, 148596.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Small Angle Neutron Scattering Reveals Wood Nanostructural Features in Decay Resistant Chemically Modified Wood
Ibach, R. E., Plaza, N. Z. & Pingali, S. V., Jan 11 2022, In: Frontiers in Forests and Global Change. 4, 814086.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Structural Reorganization of Noncellulosic Polymers Observed in Situ during Dilute Acid Pretreatment by Small-Angle Neutron Scattering
Yang, Z., Foston, M. B., O'Neill, H., Urban, V. S., Ragauskas, A., Evans, B. R., Davison, B. H. & Pingali, S. V., Jan 10 2022, In: ACS Sustainable Chemistry and Engineering. 10, 1, p. 314-322 9 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations