Publications per year
Publications per year
- 1 - 50 out of 71 results
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2024
Model-Data Integration at the SPRUCE Experiment
Ricciuto, D., Jan 1 2024, Land Carbon Cycle Modeling: Matrix Approach, Data Assimilation, Ecological Forecasting, and Machine Learning, Second Edition. CRC Press, p. 163-166 4 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open Access -
2023
Biomass-derived composites for various applications
De, S., James, B., Ji, J., Wasti, S., Zhang, S., Kore, S., Tekinalp, H., Li, Y., Ureña-Benavides, E. E., Vaidya, U., Ragauskas, A. J., Webb, E., Ozcan, S. & Zhao, X., Jan 2023, Advances in Bioenergy. Li, Y. & Chang, C. (eds.). Elsevier Inc., p. 145-196 52 p. (Advances in Bioenergy; vol. 8).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
11 Scopus citations -
Carbon Nanotube and Graphene Oxide Reinforced Composites for Lightning Strike Protection of Composite Structures
Kumar, V., Das, S., Zhao, X. & Zhou, Y., Jan 1 2023, Emerging Applications of Carbon Nanotubes and Graphene. CRC Press, p. 91-104 14 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Identifying Fungal Secondary Metabolites and Their Role in Plant Pathogenesis
Tannous, J., Labbé, J. & Keller, N. P., 2023, Methods in Molecular Biology. Humana Press Inc., p. 193-218 26 p. (Methods in Molecular Biology; vol. 2659).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
3 Scopus citations -
Use of Fluorescent Protein Reporters for Assessing and Detecting Genome Editing Reagents and Transgene Expression in Plants
Yuan, G., Tuskan, G. A. & Yang, X., 2023, Methods in Molecular Biology. Humana Press Inc., p. 115-127 13 p. (Methods in Molecular Biology; vol. 2653).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
2022
Antiviral Strategies Against SARS-CoV-2: A Systems Biology Approach
Prates, E. T., Garvin, M. R., Jones, P., Miller, J. I., Sullivan, K. A., Cliff, A., Gazolla, J. G. F. M., Shah, M. B., Walker, A. M., Lane, M., Rentsch, C. T., Justice, A., Pavicic, M., Romero, J. & Jacobson, D., 2022, Methods in Molecular Biology. Humana Press Inc., p. 317-351 35 p. (Methods in Molecular Biology; vol. 2452).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Application of the metabolic modeling pipeline in KBase to categorize reactions, predict essential genes, and predict pathways in an isolate genome
Allen, B. H., Gupta, N., Edirisinghe, J. N., Faria, J. P. & Henry, C. S., 2022, Methods in Molecular Biology. Humana Press Inc., p. 291-320 30 p. (Methods in Molecular Biology; vol. 2349).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
4 Scopus citations -
Development and Application of DropletProbe Mass Spectrometry for Examining Biodistribution of Therapeutics
Chen, B., Vavrek, M., Cancilla, M. T. & Kertesz, V., 2022, Methods in Molecular Biology. Humana Press Inc., p. 171-180 10 p. (Methods in Molecular Biology; vol. 2437).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Exploring large scale data analysis and visualization for atmospheric radiation measurement data discovery using NOSQL technologies
Krishna, B., Dumas, K. & Prakash, G., Nov 1 2022, Big Data Analytics in Earth, Atmospheric, and Ocean Sciences. wiley, p. 237-252 16 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open Access -
Land-climate interactions
Jia, G., Shevliakova, E., Artaxo, P., De Noblet-Ducoudré, N., Houghton, R., House, J., Kitajima, K., Lennard, C., Popp, A., Sirin, A., Sukumar, R., Verchot, L., Anderegg, W., Armstrong, E., Bastos, A., Bernsten, T. K., Cai, P., Calvin, K., Cherubini, F. & Connors, S. & 38 others, , Jan 1 2022, Climate Change and Land: An IPCC Special Report on climate change, desertification, land degradation, sustainable land management, food security, and greenhouse gas fluxes in terrestrial ecosystems. Cambridge University Press, p. 131-247 117 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open Access98 Scopus citations -
2021
An indicator-based approach to sustainable management of natural resources
Parish, E. S., Dale, V. H., Davis, M., Efroymson, R. A., Hilliard, M. R., Jager, H., Kline, K. L. & Xie, F., Jan 1 2021, Data Science Applied to Sustainability Analysis. Elsevier, p. 255-280 26 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Fed-batch production of deuterated protein in Escherichia coli for neutron scattering experimentation
Weiss, K. L., Fan, Y., Abraham, P., Odom, M., Pant, S., Zhang, Q. & O'Neill, H., Jan 2021, Recombinant Protein Expression: Prokaryotic Hosts and Cell-Free Systems. Kelman, Z. & O'Dell, W. B. (eds.). Academic Press Inc., p. 219-240 22 p. (Methods in Enzymology; vol. 659).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
6 Scopus citations -
Five Key Aspects of Metaproteomics as a Tool to Understand Functional Interactions in Host Associated Microbiomes
Salvato, F., Hettich, R. L. & Kleiner, M., Jan 1 2021, Advances in Clinical Immunology, Medical Microbiology, COVID-19, and Big Data. Jenny Stanford Publishing, p. 647-660 14 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
2 Scopus citations -
2020
Characterizing intracellular proteomes for microbes: An experimental approach using label-free protein quantitation
Abraham, P. E. & Hettich, R. L., 2020, Methods in Molecular Biology. Humana Press Inc., Vol. 2096. p. 81-87 7 p. (Methods in Molecular Biology; vol. 2096).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Laser capture microdissection–liquid vortex capture mass spectrometry metabolic profiling of single onion epidermis and microalgae cells
Cahill, J. F. & Kertesz, V., 2020, Methods in Molecular Biology. Humana Press Inc., p. 89-101 13 p. (Methods in Molecular Biology; vol. 2064).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
4 Scopus citations -
Measuring biomass-derived products in biological conversion and metabolic process
Yoo, C. G., Pu, Y. & Ragauskas, A. J., 2020, Methods in Molecular Biology. Humana Press Inc., p. 113-124 12 p. (Methods in Molecular Biology; vol. 2096).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Network modeling of complex data sets
Jones, P., Weighill, D., Shah, M., Climer, S., Schmutz, J., Sreedasyam, A., Tuskan, G. & Jacobson, D., 2020, Methods in Molecular Biology. Humana Press Inc., p. 197-215 19 p. (Methods in Molecular Biology; vol. 2096).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open Access4 Scopus citations -
2019
Feature Design for Protein Interface Hotspots Using KFC2 and Rosetta
Seeger, F., Little, A., Chen, Y., Woolf, T., Cheng, H. & Mitchell, J. C., 2019, Association for Women in Mathematics Series. Springer, p. 177-197 21 p. (Association for Women in Mathematics Series; vol. 17).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open Access1 Scopus citations -
Responses of alpine plant communities to climate warming
Winkler, D. E., Lubetkin, K. C., Carrell, A. A., Jabis, M. D., Yang, Y. & Kueppers, L. M., Apr 13 2019, Ecosystem Consequences of Soil Warming: Microbes, Vegetation, Fauna and Soil Biogeochemistry. Elsevier, p. 297-346 50 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
24 Scopus citations -
2018
An analysis of alternative fuel credit provisions of US automotive fuel economy standards
Rubin, J. & Leiby, P., Jan 1 2018, Controlling Automobile Air Pollution. Taylor and Francis, p. 491-503 13 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Reconstruction and analysis of central metabolism in microbes
Edirisinghe, J. N., Faria, J. P., Harris, N. L., Allen, B. H. & Henry, C. S., 2018, Methods in Molecular Biology. Humana Press Inc., p. 111-129 19 p. (Methods in Molecular Biology; vol. 1716).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
2 Scopus citations -
The path forward for biofuels and biomaterials
Ragauskas, A. J., Williams, C. K., Davison, B. H., Britovsek, G., Cairney, J., Eckert, C. A., Frederick, W. J., Hallett, J. P., Leak, D. J., Liotta, C. L., Mielenz, J. R., Murphy, R., Templer, R. & Tschaplinski, T., Dec 14 2018, Renewable Energy: Renewable Energy Technologies II. Taylor and Francis, Vol. 3-4. p. 271-283 13 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
8 Scopus citations -
Utilization of a detergent-based method for direct microbial cellular lysis/proteome extraction from soil samples for metaproteomics studies
Chourey, K. & Hettich, R. L., 2018, Methods in Molecular Biology. Humana Press Inc., p. 293-302 10 p. (Methods in Molecular Biology; vol. 1841).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
5 Scopus citations -
2017
Cellular interfacing with arrays of vertically aligned carbon nanofibers and nanofiber-templated materials
McKnight, T. E., Melechko, A. V., Griffin, G. D., Guillorn, M. A., Merkulov, V. I., Doktycz, M. J., Ericson, M. N. & Simpson, M. L., Jan 1 2017, Nanotechnology in Biology and Medicine: Methods, Devices, and Applications, Second Edition. CRC Press, p. 177-201 25 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Network metamodeling: Effect of correlation metric choice on phylogenomic and transcriptomic network topology
Weighill, D. A. & Jacobson, D., 2017, Advances in Biochemical Engineering/Biotechnology. Springer Science and Business Media Deutschland GmbH, p. 143-183 41 p. (Advances in Biochemical Engineering/Biotechnology; vol. 160).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
5 Scopus citations -
Preserve: Protecting data for long-term use
Cook, R. B., Wei, Y., Hook, L. A., Vannan, S. K. S. & McNelis, J. J., Oct 21 2017, Ecological Informatics: Data Management and Knowledge Discovery: Third Edition. Springer International Publishing, p. 89-113 25 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
8 Scopus citations -
Uncertainty in estimates of bioenergy-induced land use change: The impact of inconsistent land cover data sets and land class definitions
Singh, N., Kline, K. L., Efroymson, R. A., Bhaduri, B. & O’Banion, B., Jan 1 2017, Bioenergy and Land Use Change: Impact on Natural Capital and Ecosystem Services. wiley, p. 143-153 11 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
3 Scopus citations -
2016
Analytical methods for biomass characterization during pretreatment and bioconversion?
Pu, Y., Meng, X., Yoo, C. G., Li, M. & Ragauskas, A. J., Jan 1 2016, Valorization of Lignocellulosic Biomass in a Biorefinery: From Logistics to Environmental and Performance Impact. Nova Science Publishers, Inc., p. 37-78 42 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
8 Scopus citations -
Modeling Mercury in Proteins
Parks, J. M. & Smith, J. C., 2016, Computational Approaches for Studying Enzyme Mechanism Part B. Academic Press Inc., p. 103-122 20 p. (Methods in Enzymology; vol. 578).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
14 Scopus citations -
2015
Clostridium thermocellum: Engineered for the Production of Bioethanol
Brown, S. D., Sander, K. B., Wu, C. W. & Guss, A. M., May 29 2015, Direct Microbial Conversion of Biomass to Advanced Biofuels. Elsevier, p. 321-333 13 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
3 Scopus citations -
Production of Bacterial Cellulose with Controlled Deuterium-Hydrogen Substitution for Neutron Scattering Studies
O'Neill, H., Shah, R., Evans, B. R., He, J., Pingali, S. V., Chundawat, S. P. S., Jones, A. D., Langan, P., Davison, B. H. & Urban, V., 2015, Methods in Enzymology. Academic Press Inc., p. 123-146 24 p. (Methods in Enzymology; vol. 565).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
10 Scopus citations -
2014
Applications of high resolution laser: Induced breakdown spectroscopy for environmental and biological samples
Martin, M. Z., Labbe, N. & Wagner, R. J., 2014, Laser-Induced Breakdown Spectroscopy: Theory and Applications. Springer Verlag, p. 439-456 18 p. (Springer Series in Optical Sciences; vol. 182).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
3 Scopus citations -
Forest Processes
Ryan, M. G., Vose, J. M., Hanson, P. J., Iverson, L. R., Miniat, C. F., Luce, C. H., Band, L. E., Klein, S. L., McKenzie, D. & Wear, D. N., 2014, Advances in Global Change Research. Springer International Publishing, p. 25-54 30 p. (Advances in Global Change Research; vol. 57).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
4 Scopus citations -
2013
Analysis of cell division and cell elongation in the hypocotyls of arabidopsis heterotrimeric G protein mutants
Jin, Z., Muchero, W. & Chen, J. G., 2013, G Protein-Coupled Receptor Signaling in Plants: Methods and Protocols. Humana Press Inc., p. 37-43 7 p. (Methods in Molecular Biology; vol. 1043).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
An assessment of energy potential at non-powered dams in the United States
Hadjerioua, B., Wei, Y. & Kao, S. C., Jan 2013, Hydropower and Energy Potential at Non-Powered Dams. Nova Science Publishers, Inc., p. 41-82 42 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
A U.S. carbon cycle science plan
Michalak, A. M., Jackson, R. B., Marland, G., Sabine, C. L., Anderson, R. F., Bronk, D., Davis, K. J., DeFries, R. S., Denning, A. S., Dilling, L., Jacobson, A., Lohrenz, S., McGuire, A. D., McKinley, G. A., Miller, C., Moore, B., Ojima, D. S., O'Neill, B., Randerson, J. T. & Running, S. W. & 5 others, , 2013, Carbon Cycle Science: Research Priorities and Congressional Considerations. Nova Science Publishers, Inc., p. 1-118 118 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Organic versus conventional strawberry agroecosystem
Reganold, J. P., Andrews, P. K., Reeve, J. R., Carpenter-Boggs, L., Schadt, C. W., Alldredge, J. R., Ross, C. F., Davies, N. M. & Zhou, J., Jan 1 2013, Sustainable Soil Management. Apple Academic Press, p. 185-216 32 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
Open Access -
Plant Cell Walls: Basics of Structure, Chemistry, Accessibility and the Influence on Conversion
Davison, B. H., Parks, J., Davis, M. F. & Donohoe, B. S., Apr 5 2013, Aqueous Pretreatment of Plant Biomass for Biological and Chemical Conversion to Fuels and Chemicals. John Wiley and Sons, p. 23-38 16 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
80 Scopus citations -
Response of chlorophyll fluorescence parameters of illicium lanceolatum to different light conditions
Cao, Y., Zhou, B., Zhang, R. & Gu, L., 2013, Advanced Topics in Science and Technology in China. Springer Science and Business Media Deutschland GmbH, p. 702-706 5 p. (Advanced Topics in Science and Technology in China).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
2 Scopus citations -
Temperature sensitivity of canopy photosynthesis phenology in northern ecosystems
Niu, S., Fu, Y., Gu, L. & Luo, Y., Nov 1 2013, Phenology: An Integrative Environmental Science. Springer Netherlands, p. 503-519 17 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
8 Scopus citations -
The economic availability of woody biomass feedstocks in the Northeast
Langholtz, M. & Jacobson, M., Nov 1 2013, Wood-Based Energy in the Northern Forests. Springer New York, Vol. 9781461494782. p. 37-59 23 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
2012
Anaerobic high-throughput cultivation method for isolation of thermophiles using biomass-derived substrates
Hamilton-Brehm, S. D., Vishnivetskaya, T. A., Allman, S. L., Mielenz, J. R. & Elkins, J. G., 2012, Biomass Conversion: Methods and Protocols. Himmel, M. (ed.). p. 153-168 16 p. (Methods in Molecular Biology; vol. 908).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
10 Scopus citations -
Electrochemistry of the Electrospray Ion Source
Van Berkel, G. J. & Kertesz, V., Nov 27 2012, Electrospray and MALDI Mass Spectrometry: Fundamentals, Instrumentation, Practicalities, and Biological Applications: Second Edition. John Wiley and Sons, p. 75-122 48 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
8 Scopus citations -
Ethanol-tolerant gene identification in clostridium thermocellum using pyro-resequencing for metabolic engineering
Yang, S., Klingeman, D. M. & Brown, S. D., 2012, Microbial Metabolic Engineering: Methods and Protocols. Cheng, Q. (ed.). p. 111-136 26 p. (Methods in Molecular Biology; vol. 834).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Molecular simulation in the energy biosciences
Cheng, X., Parks, J. M., Petridis, L., Lindner, B., Schulz, R., Guo, H. B., Srinivas, G. & Smith, J. C., 2012, RSC Biomolecular Sciences. Royal Society of Chemistry, p. 87-114 28 p. (RSC Biomolecular Sciences; vol. 1).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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2011
Analysis of the transition to hydrogen fuel cell vehicles and the potential hydrogen energy infrastructure requirements
Greene, D. L., Leiby, P. N., Brian, J., Perez, J., Melendez, M., Milbrandt, A., Unnasch, S., Rutherford, D. & Hooks, M., Apr 1 2011, Transition to Hydrogen Fuel Cell Vehicles. Nova Science Publishers, Inc., p. 65-130 66 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Environmental metaproteomics: Identifying the protein machinery that impact the activities and interactions of microbes in isolation or communities
Giannone, R. J., Keller, M. & Hettich, R., 2011, Metagenomics and its Applications in Agriculture, Biomedicine and Environmental Studies. Nova Science Publishers, Inc., p. 408-436 29 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Mercury Detoxification by Bacteria: Simulations of Transcription Activation and Mercury-Carbon Bond Cleavage
Guo, H. B., Parks, J. M., Johs, A. & Smith, J. C., Sep 19 2011, Modeling of Molecular Properties. Wiley-VCH, p. 311-324 14 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Microbial cell imaging using atomic force microscopy
Doktycz, M. J., Sullivan, C. J., Mortensen, N. P. & Allison, D. P., Jul 31 2011, Life at the Nanoscale: Atomic Force Microscopy of Live Cells. Pan Stanford Publishing Pte. Ltd., p. 45-70 26 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
1 Scopus citations -
Statistical Hydrology
Grimaldi, S., Kao, S. C., Castellarin, A., Papalexiou, S. M., Viglione, A., Laio, F., Aksoy, H. & Gedikli, A., 2011, The Science of Hydrology. Elsevier, Vol. 2. p. 479-517 39 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
50 Scopus citations