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Whole genome resequencing data from a collection of Clostridium Thermocellum strains

  • Olson Daniel (Creator)
  • Ambarish Nag (Creator)
  • Struan Clark (Creator)
  • Stanton Martin (Oak Ridge National Lab. (ORNL), TN (United States) Plant Microbe Interfaces) (Creator)

Dataset

Description

Clostridium thermocellum is an anaerobic thermophilic bacterium that natively ferments cellulose to ethanol and organic acids. This data set is a collection of whole genome resequencing data for several hundred strains of Clostridium thermocellum. It includes strains that have been engineered to increase ethanol production, strains that have been engineered to understand microbial physiology, and strains that have been adapted for desired phenotypes including increased ethanol tolerance. Resequencing data consists of paired Illumina reads, 100-150 bp on each end, with a ~500 bp insert size. One data file containing raw Illumina data (interleaved) is available for each strain. We also provide data describing the mutations identified in each strain, and distinguish between inherited and newly observed mutations. In addition to resequencing data, we also provide metadata describing the lineage of each strain, and any targeted genetic modifications.
Date made available2023
PublisherOak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Funding

FundersFunder number
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science (BSS)
USDOEAC05-00OR22725

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