Datasets (raw data, intermediate results, and final results) and Jupyter notebooks as part of the following journal publication: Feature extraction via similarity search: application to atom finding and denoising in electron and scanning probe microscopy imaging Suhas Somnath, Christopher R. Smith, Sergei V. Kalinin, Miaofang Chi, Albina Borisevich, Nicholas Cross, Gerd Duscher and Stephen Jesse Advanced Structural and Chemical Imaging, 2018, 4:3 https://doi.org/10.1186/s40679-018-0052-y